Hb_003687_220

Information

Type transcription factor
Description TF Family: MYB
Location Contig3687: 162611-164193
Sequence    

Annotation

kegg
ID pop:POPTR_0008s16660g
description POPTRDRAFT_832837; hypothetical protein
nr
ID XP_002311670.1
description hypothetical protein POPTR_0008s16660g [Populus trichocarpa]
swissprot
ID Q7XBH4
description Myb-related protein Myb4 OS=Oryza sativa subsp. japonica GN=MYB4 PE=2 SV=2
trembl
ID B9HKG6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s16660g PE=4 SV=1
Gene Ontology
ID GO:0003677
description myb-related protein myb4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37943: 162717-163634 , PASA_asmbl_37944: 163638-164090
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003687_220 0.0 transcription factor TF Family: MYB hypothetical protein POPTR_0008s16660g [Populus trichocarpa]
2 Hb_170426_010 0.2333297794 - - cytochrome b5 isoform Cb5-B [Vernicia fordii]
3 Hb_005144_190 0.2360624951 - - hypothetical protein F383_09558 [Gossypium arboreum]
4 Hb_008759_020 0.238027227 - - PREDICTED: anthocyanidin 3-O-glucosyltransferase 2-like [Jatropha curcas]
5 Hb_002338_030 0.2454191109 - - PREDICTED: 60S acidic ribosomal protein P1-like [Tarenaya hassleriana]
6 Hb_001449_100 0.2550579503 - - PREDICTED: transcription factor bHLH149 [Jatropha curcas]
7 Hb_004679_060 0.2600380835 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000416_030 0.2654614442 transcription factor TF Family: OFP conserved hypothetical protein [Ricinus communis]
9 Hb_002768_090 0.266989637 - - PREDICTED: transcription initiation factor TFIID subunit 11 [Jatropha curcas]
10 Hb_000668_130 0.2670350703 - - -
11 Hb_007254_030 0.2691675813 - - kinase, putative [Ricinus communis]
12 Hb_000694_060 0.2709838103 - - Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative [Ricinus communis]
13 Hb_002660_120 0.2712526401 - - PREDICTED: putative serine/threonine-protein kinase [Populus euphratica]
14 Hb_000523_110 0.2725672558 - - PREDICTED: probable polyamine oxidase 4 [Jatropha curcas]
15 Hb_003181_060 0.2831355128 - - PREDICTED: triosephosphate isomerase, cytosolic [Jatropha curcas]
16 Hb_002309_050 0.2866916897 - - beta-carotene hydroxylase, putative [Ricinus communis]
17 Hb_006836_030 0.2881153237 - - PREDICTED: OTU domain-containing protein DDB_G0284757 [Jatropha curcas]
18 Hb_002835_340 0.2882313193 - - PREDICTED: peroxisomal primary amine oxidase [Jatropha curcas]
19 Hb_000622_080 0.2884710046 - - auxin-responsive GH3 family protein [Hevea brasiliensis]
20 Hb_001470_070 0.2902848354 - - metal ion binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_003687_220 Hb_003687_220 Hb_170426_010 Hb_170426_010 Hb_003687_220--Hb_170426_010 Hb_005144_190 Hb_005144_190 Hb_003687_220--Hb_005144_190 Hb_008759_020 Hb_008759_020 Hb_003687_220--Hb_008759_020 Hb_002338_030 Hb_002338_030 Hb_003687_220--Hb_002338_030 Hb_001449_100 Hb_001449_100 Hb_003687_220--Hb_001449_100 Hb_004679_060 Hb_004679_060 Hb_003687_220--Hb_004679_060 Hb_170426_010--Hb_004679_060 Hb_004089_020 Hb_004089_020 Hb_170426_010--Hb_004089_020 Hb_004787_040 Hb_004787_040 Hb_170426_010--Hb_004787_040 Hb_020805_060 Hb_020805_060 Hb_170426_010--Hb_020805_060 Hb_000189_540 Hb_000189_540 Hb_170426_010--Hb_000189_540 Hb_000011_300 Hb_000011_300 Hb_170426_010--Hb_000011_300 Hb_001470_070 Hb_001470_070 Hb_005144_190--Hb_001470_070 Hb_000886_030 Hb_000886_030 Hb_005144_190--Hb_000886_030 Hb_000599_310 Hb_000599_310 Hb_005144_190--Hb_000599_310 Hb_002631_300 Hb_002631_300 Hb_005144_190--Hb_002631_300 Hb_001623_070 Hb_001623_070 Hb_005144_190--Hb_001623_070 Hb_002284_190 Hb_002284_190 Hb_008759_020--Hb_002284_190 Hb_001776_190 Hb_001776_190 Hb_008759_020--Hb_001776_190 Hb_002660_120 Hb_002660_120 Hb_008759_020--Hb_002660_120 Hb_000694_060 Hb_000694_060 Hb_008759_020--Hb_000694_060 Hb_003120_040 Hb_003120_040 Hb_008759_020--Hb_003120_040 Hb_002835_340 Hb_002835_340 Hb_002338_030--Hb_002835_340 Hb_002338_030--Hb_000599_310 Hb_003673_040 Hb_003673_040 Hb_002338_030--Hb_003673_040 Hb_006836_030 Hb_006836_030 Hb_002338_030--Hb_006836_030 Hb_000317_420 Hb_000317_420 Hb_002338_030--Hb_000317_420 Hb_028271_020 Hb_028271_020 Hb_001449_100--Hb_028271_020 Hb_001449_100--Hb_004679_060 Hb_002784_100 Hb_002784_100 Hb_001449_100--Hb_002784_100 Hb_011609_110 Hb_011609_110 Hb_001449_100--Hb_011609_110 Hb_003398_020 Hb_003398_020 Hb_001449_100--Hb_003398_020 Hb_007017_010 Hb_007017_010 Hb_001449_100--Hb_007017_010 Hb_007313_080 Hb_007313_080 Hb_004679_060--Hb_007313_080 Hb_004679_060--Hb_000189_540 Hb_004679_060--Hb_020805_060 Hb_004679_060--Hb_004787_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0760776 1.69094 3.53754 1.92352 0.0381431 0.0334512
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.608647 10.4983 0.190261 3.8262 2.75089

CAGE analysis