Hb_003687_230

Information

Type -
Description -
Location Contig3687: 171956-175360
Sequence    

Annotation

kegg
ID tcc:TCM_020887
description Actin depolymerizing factor 6
nr
ID XP_012069830.1
description PREDICTED: actin-depolymerizing factor-like [Jatropha curcas]
swissprot
ID Q8SAG3
description Actin-depolymerizing factor OS=Vitis vinifera PE=2 SV=1
trembl
ID A1XJ47
description Actin depolymerizing factor 4 OS=Gossypium hirsutum GN=ADF4 PE=2 SV=1
Gene Ontology
ID GO:0015629
description actin-depolymerizing factor

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37945: 171843-175343 , PASA_asmbl_37946: 174138-174702
cDNA
(Sanger)
(ID:Location)		 019_K10.ab1: 172097-175334

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003687_230 0.0 - - PREDICTED: actin-depolymerizing factor-like [Jatropha curcas]
2 Hb_000610_010 0.0572038474 - - PREDICTED: SKP1-like protein 1B [Musa acuminata subsp. malaccensis]
3 Hb_003292_040 0.0678669168 transcription factor TF Family: MBF1 uncharacterized protein LOC100500420 [Glycine max]
4 Hb_000009_530 0.0712642175 - - PREDICTED: uncharacterized protein LOC105639628 [Jatropha curcas]
5 Hb_000926_310 0.0713315787 - - uncharacterized protein LOC100500241 [Glycine max]
6 Hb_001329_130 0.0740538606 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003078_040 0.0748550348 - - PREDICTED: hit family protein 1 isoform X1 [Jatropha curcas]
8 Hb_002639_150 0.0750632253 - - -
9 Hb_004093_090 0.076631521 - - PREDICTED: uncharacterized protein LOC105633550 [Jatropha curcas]
10 Hb_022250_030 0.0801844831 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001586_040 0.0811519145 - - hypothetical protein JCGZ_17187 [Jatropha curcas]
12 Hb_004785_190 0.0822144511 - - PHD finger family protein [Populus trichocarpa]
13 Hb_003683_050 0.0822294297 - - PREDICTED: uncharacterized protein LOC105650619 [Jatropha curcas]
14 Hb_011970_030 0.0826861521 - - PREDICTED: uncharacterized protein LOC105641805 [Jatropha curcas]
15 Hb_002233_150 0.0847917818 - - PREDICTED: uncharacterized protein LOC105633093 [Jatropha curcas]
16 Hb_002292_010 0.0864020869 - - hypothetical protein CICLE_v10029628mg [Citrus clementina]
17 Hb_002234_140 0.0864791116 - - DNA-directed RNA polymerase II family protein [Populus trichocarpa]
18 Hb_001348_070 0.0867847565 - - Uncharacterized protein isoform 1 [Theobroma cacao]
19 Hb_002784_050 0.088536908 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Jatropha curcas]
20 Hb_007007_050 0.088873334 - - PREDICTED: ubiquitin-related modifier 1 homolog 2 [Malus domestica]

Gene co-expression network

sample Hb_003687_230 Hb_003687_230 Hb_000610_010 Hb_000610_010 Hb_003687_230--Hb_000610_010 Hb_003292_040 Hb_003292_040 Hb_003687_230--Hb_003292_040 Hb_000009_530 Hb_000009_530 Hb_003687_230--Hb_000009_530 Hb_000926_310 Hb_000926_310 Hb_003687_230--Hb_000926_310 Hb_001329_130 Hb_001329_130 Hb_003687_230--Hb_001329_130 Hb_003078_040 Hb_003078_040 Hb_003687_230--Hb_003078_040 Hb_000610_010--Hb_000009_530 Hb_004093_090 Hb_004093_090 Hb_000610_010--Hb_004093_090 Hb_000107_190 Hb_000107_190 Hb_000610_010--Hb_000107_190 Hb_073973_130 Hb_073973_130 Hb_000610_010--Hb_073973_130 Hb_000610_010--Hb_003292_040 Hb_001564_130 Hb_001564_130 Hb_003292_040--Hb_001564_130 Hb_011970_030 Hb_011970_030 Hb_003292_040--Hb_011970_030 Hb_000670_020 Hb_000670_020 Hb_003292_040--Hb_000670_020 Hb_002233_150 Hb_002233_150 Hb_003292_040--Hb_002233_150 Hb_000286_070 Hb_000286_070 Hb_000009_530--Hb_000286_070 Hb_000009_530--Hb_004093_090 Hb_000144_100 Hb_000144_100 Hb_000009_530--Hb_000144_100 Hb_000009_530--Hb_003292_040 Hb_002639_150 Hb_002639_150 Hb_000926_310--Hb_002639_150 Hb_000661_140 Hb_000661_140 Hb_000926_310--Hb_000661_140 Hb_020367_050 Hb_020367_050 Hb_000926_310--Hb_020367_050 Hb_005288_150 Hb_005288_150 Hb_000926_310--Hb_005288_150 Hb_000368_020 Hb_000368_020 Hb_000926_310--Hb_000368_020 Hb_000260_100 Hb_000260_100 Hb_001329_130--Hb_000260_100 Hb_001329_130--Hb_020367_050 Hb_000649_070 Hb_000649_070 Hb_001329_130--Hb_000649_070 Hb_000236_240 Hb_000236_240 Hb_001329_130--Hb_000236_240 Hb_001329_130--Hb_005288_150 Hb_006960_050 Hb_006960_050 Hb_001329_130--Hb_006960_050 Hb_028995_040 Hb_028995_040 Hb_003078_040--Hb_028995_040 Hb_000866_270 Hb_000866_270 Hb_003078_040--Hb_000866_270 Hb_025645_010 Hb_025645_010 Hb_003078_040--Hb_025645_010 Hb_000367_200 Hb_000367_200 Hb_003078_040--Hb_000367_200 Hb_003078_040--Hb_002233_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
86.5278 45.285 64.4624 33.1445 74.5434 53.6818
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
70.0358 79.5371 35.7566 25.6196 24.3029

CAGE analysis