Hb_003688_050

Information

Type -
Description -
Location Contig3688: 28510-31156
Sequence    

Annotation

kegg
ID vvi:100854642
description uncharacterized LOC100854642
nr
ID XP_012080371.1
description PREDICTED: uncharacterized protein LOC105640616 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K8K3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11714 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37961: 28544-29644 , PASA_asmbl_37962: 29826-30328 , PASA_asmbl_37963: 30494-31391
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003688_050 0.0 - - PREDICTED: uncharacterized protein LOC105640616 isoform X2 [Jatropha curcas]
2 Hb_154471_020 0.1130808039 - - squalene synthetase [Euphorbia tirucalli]
3 Hb_002304_150 0.1149287458 - - PREDICTED: protein IQ-DOMAIN 1-like isoform X1 [Jatropha curcas]
4 Hb_001205_310 0.1281004152 - - PREDICTED: TPR repeat-containing thioredoxin TTL4-like [Jatropha curcas]
5 Hb_001799_030 0.1290700888 - - PREDICTED: ELMO domain-containing protein C-like [Jatropha curcas]
6 Hb_171376_010 0.1319478687 - - PREDICTED: uncharacterized protein LOC105630877 isoform X1 [Jatropha curcas]
7 Hb_004097_130 0.1327451989 - - Inositol-tetrakisphosphate 1-kinase, putative [Ricinus communis]
8 Hb_000808_050 0.1365288341 - - exonuclease, putative [Ricinus communis]
9 Hb_016467_010 0.1374313983 - - hypothetical protein POPTR_0004s18340g [Populus trichocarpa]
10 Hb_000086_700 0.1385380022 - - PREDICTED: 14-3-3 protein 6 [Jatropha curcas]
11 Hb_007017_080 0.1393259712 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
12 Hb_011671_310 0.1393610125 - - PREDICTED: polycomb group protein EMBRYONIC FLOWER 2 [Jatropha curcas]
13 Hb_001124_010 0.1395187649 - - PREDICTED: serine/threonine-protein kinase WNK8 isoform X2 [Jatropha curcas]
14 Hb_007811_040 0.1405028688 - - PREDICTED: trafficking protein particle complex subunit 4 isoform X1 [Gossypium raimondii]
15 Hb_001517_050 0.1434159601 transcription factor TF Family: BBR-BPC conserved hypothetical protein [Ricinus communis]
16 Hb_000046_040 0.1449690399 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003531_080 0.1453325012 - - PREDICTED: small G protein signaling modulator 2 isoform X1 [Jatropha curcas]
18 Hb_094121_010 0.146924568 - - -
19 Hb_000890_130 0.1473456723 - - PREDICTED: probable serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit TON2 [Phoenix dactylifera]
20 Hb_005054_080 0.1478166214 transcription factor TF Family: LIM Pollen-specific protein SF3, putative [Ricinus communis]

Gene co-expression network

sample Hb_003688_050 Hb_003688_050 Hb_154471_020 Hb_154471_020 Hb_003688_050--Hb_154471_020 Hb_002304_150 Hb_002304_150 Hb_003688_050--Hb_002304_150 Hb_001205_310 Hb_001205_310 Hb_003688_050--Hb_001205_310 Hb_001799_030 Hb_001799_030 Hb_003688_050--Hb_001799_030 Hb_171376_010 Hb_171376_010 Hb_003688_050--Hb_171376_010 Hb_004097_130 Hb_004097_130 Hb_003688_050--Hb_004097_130 Hb_154471_020--Hb_002304_150 Hb_003531_080 Hb_003531_080 Hb_154471_020--Hb_003531_080 Hb_154471_020--Hb_004097_130 Hb_006132_090 Hb_006132_090 Hb_154471_020--Hb_006132_090 Hb_062226_130 Hb_062226_130 Hb_154471_020--Hb_062226_130 Hb_002754_010 Hb_002754_010 Hb_154471_020--Hb_002754_010 Hb_002304_150--Hb_001799_030 Hb_012258_010 Hb_012258_010 Hb_002304_150--Hb_012258_010 Hb_002304_150--Hb_006132_090 Hb_000375_350 Hb_000375_350 Hb_002304_150--Hb_000375_350 Hb_000110_310 Hb_000110_310 Hb_002304_150--Hb_000110_310 Hb_003728_060 Hb_003728_060 Hb_002304_150--Hb_003728_060 Hb_001205_310--Hb_002304_150 Hb_001711_020 Hb_001711_020 Hb_001205_310--Hb_001711_020 Hb_002235_250 Hb_002235_250 Hb_001205_310--Hb_002235_250 Hb_013726_020 Hb_013726_020 Hb_001205_310--Hb_013726_020 Hb_000869_020 Hb_000869_020 Hb_001205_310--Hb_000869_020 Hb_001575_070 Hb_001575_070 Hb_001205_310--Hb_001575_070 Hb_000720_040 Hb_000720_040 Hb_001799_030--Hb_000720_040 Hb_001799_030--Hb_012258_010 Hb_000300_500 Hb_000300_500 Hb_001799_030--Hb_000300_500 Hb_001799_030--Hb_000110_310 Hb_002681_100 Hb_002681_100 Hb_001799_030--Hb_002681_100 Hb_171376_010--Hb_000375_350 Hb_171376_010--Hb_012258_010 Hb_171376_010--Hb_002304_150 Hb_000690_160 Hb_000690_160 Hb_171376_010--Hb_000690_160 Hb_171376_010--Hb_000869_020 Hb_171376_010--Hb_003728_060 Hb_001472_060 Hb_001472_060 Hb_004097_130--Hb_001472_060 Hb_004097_130--Hb_003531_080 Hb_000103_480 Hb_000103_480 Hb_004097_130--Hb_000103_480 Hb_000635_090 Hb_000635_090 Hb_004097_130--Hb_000635_090 Hb_003688_040 Hb_003688_040 Hb_004097_130--Hb_003688_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.97792 1.08614 4.73221 3.06997 0.683025 2.05542
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.77894 2.09854 3.36257 1.21543 1.33414

CAGE analysis