Hb_003688_140

Information

Type -
Description -
Location Contig3688: 96454-103448
Sequence    

Annotation

kegg
ID rcu:RCOM_1469830
description hypothetical protein
nr
ID XP_012080381.1
description PREDICTED: uncharacterized protein LOC105640628 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K8L3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11724 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37976: 95619-97228 , PASA_asmbl_37977: 97231-103477
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003688_140 0.0 - - PREDICTED: uncharacterized protein LOC105640628 [Jatropha curcas]
2 Hb_000538_300 0.1190038973 - - PREDICTED: WAT1-related protein At3g02690, chloroplastic [Jatropha curcas]
3 Hb_000264_280 0.1270593244 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Jatropha curcas]
4 Hb_000684_200 0.1274236458 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
5 Hb_000005_100 0.1280746817 - - PREDICTED: pheophorbide a oxygenase, chloroplastic [Jatropha curcas]
6 Hb_004162_270 0.1287418418 - - PREDICTED: superoxide dismutase [Cu-Zn], chloroplastic isoform X1 [Jatropha curcas]
7 Hb_010098_040 0.1332410539 - - PREDICTED: DNA-binding protein SMUBP-2 [Jatropha curcas]
8 Hb_074109_010 0.1359183638 - - PREDICTED: putative auxin efflux carrier component 5 [Jatropha curcas]
9 Hb_000834_060 0.1399203567 - - PREDICTED: probable chlorophyll(ide) b reductase NYC1, chloroplastic isoform X1 [Jatropha curcas]
10 Hb_005784_030 0.1432905174 - - PREDICTED: uncharacterized protein LOC105645162 isoform X2 [Jatropha curcas]
11 Hb_004223_270 0.1436345479 - - PREDICTED: uncharacterized protein LOC105635371 isoform X1 [Jatropha curcas]
12 Hb_000208_270 0.1444617218 - - PREDICTED: malate dehydrogenase [NADP], chloroplastic [Jatropha curcas]
13 Hb_005181_120 0.1465959843 - - PREDICTED: psbB mRNA maturation factor Mbb1, chloroplastic isoform X1 [Jatropha curcas]
14 Hb_000457_250 0.1494131862 - - PREDICTED: calmodulin-like protein 1 [Jatropha curcas]
15 Hb_000054_030 0.150547382 - - hypothetical protein POPTR_0010s17680g [Populus trichocarpa]
16 Hb_002374_450 0.1516028642 - - PREDICTED: chlorophyllide a oxygenase, chloroplastic [Jatropha curcas]
17 Hb_002716_110 0.1521832174 - - PREDICTED: interaptin [Jatropha curcas]
18 Hb_000516_080 0.1541087301 - - hypothetical protein POPTR_0010s24810g [Populus trichocarpa]
19 Hb_000395_010 0.1551068712 - - alpha/beta hydrolase domain containing protein 1,3, putative [Ricinus communis]
20 Hb_001014_020 0.1564689353 - - gene GA family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_003688_140 Hb_003688_140 Hb_000538_300 Hb_000538_300 Hb_003688_140--Hb_000538_300 Hb_000264_280 Hb_000264_280 Hb_003688_140--Hb_000264_280 Hb_000684_200 Hb_000684_200 Hb_003688_140--Hb_000684_200 Hb_000005_100 Hb_000005_100 Hb_003688_140--Hb_000005_100 Hb_004162_270 Hb_004162_270 Hb_003688_140--Hb_004162_270 Hb_010098_040 Hb_010098_040 Hb_003688_140--Hb_010098_040 Hb_000208_270 Hb_000208_270 Hb_000538_300--Hb_000208_270 Hb_020400_020 Hb_020400_020 Hb_000538_300--Hb_020400_020 Hb_000787_210 Hb_000787_210 Hb_000538_300--Hb_000787_210 Hb_001969_130 Hb_001969_130 Hb_000538_300--Hb_001969_130 Hb_000084_140 Hb_000084_140 Hb_000538_300--Hb_000084_140 Hb_003664_030 Hb_003664_030 Hb_000264_280--Hb_003664_030 Hb_000108_150 Hb_000108_150 Hb_000264_280--Hb_000108_150 Hb_000061_250 Hb_000061_250 Hb_000264_280--Hb_000061_250 Hb_001269_500 Hb_001269_500 Hb_000264_280--Hb_001269_500 Hb_003948_020 Hb_003948_020 Hb_000264_280--Hb_003948_020 Hb_001649_030 Hb_001649_030 Hb_000264_280--Hb_001649_030 Hb_010557_010 Hb_010557_010 Hb_000684_200--Hb_010557_010 Hb_000684_200--Hb_004162_270 Hb_002811_250 Hb_002811_250 Hb_000684_200--Hb_002811_250 Hb_004837_100 Hb_004837_100 Hb_000684_200--Hb_004837_100 Hb_000684_200--Hb_010098_040 Hb_005181_120 Hb_005181_120 Hb_000684_200--Hb_005181_120 Hb_004223_270 Hb_004223_270 Hb_000005_100--Hb_004223_270 Hb_022425_050 Hb_022425_050 Hb_000005_100--Hb_022425_050 Hb_003055_070 Hb_003055_070 Hb_000005_100--Hb_003055_070 Hb_000976_130 Hb_000976_130 Hb_000005_100--Hb_000976_130 Hb_007765_130 Hb_007765_130 Hb_000005_100--Hb_007765_130 Hb_001053_020 Hb_001053_020 Hb_000005_100--Hb_001053_020 Hb_000270_280 Hb_000270_280 Hb_004162_270--Hb_000270_280 Hb_003680_090 Hb_003680_090 Hb_004162_270--Hb_003680_090 Hb_003053_070 Hb_003053_070 Hb_004162_270--Hb_003053_070 Hb_000395_010 Hb_000395_010 Hb_004162_270--Hb_000395_010 Hb_005784_030 Hb_005784_030 Hb_004162_270--Hb_005784_030 Hb_010098_040--Hb_005181_120 Hb_010098_040--Hb_002811_250 Hb_000516_080 Hb_000516_080 Hb_010098_040--Hb_000516_080 Hb_007982_040 Hb_007982_040 Hb_010098_040--Hb_007982_040 Hb_000679_080 Hb_000679_080 Hb_010098_040--Hb_000679_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0986927 2.00435 4.41566 3.20384 0.0367188 0.502413
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.525606 1.189 0.294306 1.20628 8.1639

CAGE analysis