Hb_003688_230

Information

Type -
Description -
Location Contig3688: 139633-149933
Sequence    

Annotation

kegg
ID rcu:RCOM_1469650
description hypothetical protein
nr
ID XP_012080391.1
description PREDICTED: ninja-family protein AFP3-like isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9RLM9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1469650 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003688_230 0.0 - - PREDICTED: ninja-family protein AFP3-like isoform X2 [Jatropha curcas]
2 Hb_082870_010 0.1538150655 - - Disease resistance protein RFL1, putative [Ricinus communis]
3 Hb_050236_010 0.1767056817 - - hypothetical protein EUGRSUZ_E02960, partial [Eucalyptus grandis]
4 Hb_000094_120 0.1777029468 - - PREDICTED: uncharacterized protein At1g01500 [Jatropha curcas]
5 Hb_168068_010 0.1805406941 - - Disease resistance protein RFL1, putative [Ricinus communis]
6 Hb_000098_250 0.1810918649 - - UDP-glucose flavonoid 3-O-glucosyltransferase [Medicago truncatula]
7 Hb_000391_060 0.1868975027 - - PREDICTED: uncharacterized protein LOC104445137 [Eucalyptus grandis]
8 Hb_012098_180 0.1891065263 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_20174 [Jatropha curcas]
9 Hb_000771_030 0.192105043 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]
10 Hb_003656_170 0.1929472593 - - PREDICTED: phenylalanine ammonia-lyase-like [Jatropha curcas]
11 Hb_073119_010 0.1949313759 - - hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
12 Hb_008380_010 0.1949399005 - - PREDICTED: PRA1 family protein B4-like [Camelina sativa]
13 Hb_117127_010 0.1958697134 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH106 [Jatropha curcas]
14 Hb_002529_080 0.195887434 - - PREDICTED: 1-aminocyclopropane-1-carboxylate synthase [Jatropha curcas]
15 Hb_001123_170 0.1967448047 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000977_090 0.1977356441 - - hypothetical protein POPTR_0010s18550g [Populus trichocarpa]
17 Hb_004459_110 0.1989386149 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 isoform X2 [Populus euphratica]
18 Hb_000752_020 0.2007773735 - - PREDICTED: uncharacterized protein LOC105641803 isoform X1 [Jatropha curcas]
19 Hb_017857_010 0.2012157316 - - -
20 Hb_008667_030 0.2025380658 - - PREDICTED: premnaspirodiene oxygenase-like [Jatropha curcas]

Gene co-expression network

sample Hb_003688_230 Hb_003688_230 Hb_082870_010 Hb_082870_010 Hb_003688_230--Hb_082870_010 Hb_050236_010 Hb_050236_010 Hb_003688_230--Hb_050236_010 Hb_000094_120 Hb_000094_120 Hb_003688_230--Hb_000094_120 Hb_168068_010 Hb_168068_010 Hb_003688_230--Hb_168068_010 Hb_000098_250 Hb_000098_250 Hb_003688_230--Hb_000098_250 Hb_000391_060 Hb_000391_060 Hb_003688_230--Hb_000391_060 Hb_003602_090 Hb_003602_090 Hb_082870_010--Hb_003602_090 Hb_009510_050 Hb_009510_050 Hb_082870_010--Hb_009510_050 Hb_006615_180 Hb_006615_180 Hb_082870_010--Hb_006615_180 Hb_017604_020 Hb_017604_020 Hb_082870_010--Hb_017604_020 Hb_117127_010 Hb_117127_010 Hb_082870_010--Hb_117127_010 Hb_082870_010--Hb_000098_250 Hb_003656_170 Hb_003656_170 Hb_050236_010--Hb_003656_170 Hb_000116_290 Hb_000116_290 Hb_050236_010--Hb_000116_290 Hb_004306_140 Hb_004306_140 Hb_050236_010--Hb_004306_140 Hb_002324_050 Hb_002324_050 Hb_050236_010--Hb_002324_050 Hb_000976_340 Hb_000976_340 Hb_050236_010--Hb_000976_340 Hb_001123_170 Hb_001123_170 Hb_050236_010--Hb_001123_170 Hb_000094_250 Hb_000094_250 Hb_000094_120--Hb_000094_250 Hb_000062_490 Hb_000062_490 Hb_000094_120--Hb_000062_490 Hb_068576_010 Hb_068576_010 Hb_000094_120--Hb_068576_010 Hb_002030_180 Hb_002030_180 Hb_000094_120--Hb_002030_180 Hb_006615_160 Hb_006615_160 Hb_000094_120--Hb_006615_160 Hb_005539_260 Hb_005539_260 Hb_000094_120--Hb_005539_260 Hb_005087_030 Hb_005087_030 Hb_168068_010--Hb_005087_030 Hb_000771_030 Hb_000771_030 Hb_168068_010--Hb_000771_030 Hb_068332_010 Hb_068332_010 Hb_168068_010--Hb_068332_010 Hb_131662_010 Hb_131662_010 Hb_168068_010--Hb_131662_010 Hb_004544_090 Hb_004544_090 Hb_168068_010--Hb_004544_090 Hb_000417_120 Hb_000417_120 Hb_168068_010--Hb_000417_120 Hb_002410_010 Hb_002410_010 Hb_000098_250--Hb_002410_010 Hb_000098_250--Hb_117127_010 Hb_008667_030 Hb_008667_030 Hb_000098_250--Hb_008667_030 Hb_002529_080 Hb_002529_080 Hb_000098_250--Hb_002529_080 Hb_020648_020 Hb_020648_020 Hb_000098_250--Hb_020648_020 Hb_000098_250--Hb_000771_030 Hb_000391_060--Hb_003656_170 Hb_002097_130 Hb_002097_130 Hb_000391_060--Hb_002097_130 Hb_000589_330 Hb_000589_330 Hb_000391_060--Hb_000589_330 Hb_002370_060 Hb_002370_060 Hb_000391_060--Hb_002370_060 Hb_000391_060--Hb_000116_290 Hb_003849_200 Hb_003849_200 Hb_000391_060--Hb_003849_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.424408 0.153267 0.154034 0.0166251 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0555526 0.142991 0.0618184

CAGE analysis