Hb_003694_070

Information

Type -
Description -
Location Contig3694: 76797-78103
Sequence    

Annotation

kegg
ID tcc:TCM_007556
description Gag protease polyprotein
nr
ID XP_012468708.1
description PREDICTED: uncharacterized protein LOC105786773 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0B0NGV1
description ATP-dependent zinc metalloprotease FtsH OS=Gossypium arboreum GN=F383_19049 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003694_070 0.0 - - PREDICTED: uncharacterized protein LOC105786773 [Gossypium raimondii]
2 Hb_007111_020 0.0041587037 - - PREDICTED: uncharacterized protein LOC105793230 [Gossypium raimondii]
3 Hb_003463_040 0.0044777064 - - -
4 Hb_162933_010 0.0069183269 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
5 Hb_024128_010 0.0069717636 - - PREDICTED: uncharacterized protein LOC105766879 [Gossypium raimondii]
6 Hb_028105_020 0.0081064246 - - PREDICTED: uncharacterized protein LOC104234330 [Nicotiana sylvestris]
7 Hb_139518_020 0.0090433386 - - multidrug resistance pump, putative [Ricinus communis]
8 Hb_002417_040 0.0101045644 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]
9 Hb_047623_010 0.0116893461 - - PREDICTED: uncharacterized protein LOC105781565 [Gossypium raimondii]
10 Hb_171554_060 0.0138558932 - - PREDICTED: uncharacterized protein LOC102627687 [Citrus sinensis]
11 Hb_017279_030 0.0193215082 - - -
12 Hb_019299_040 0.0221987374 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor ABI3 [Jatropha curcas]
13 Hb_013874_010 0.0226322238 - - PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]
14 Hb_011114_050 0.0252673823 - - -
15 Hb_086455_010 0.0272653356 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
16 Hb_002628_030 0.0283620445 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
17 Hb_003401_040 0.0293584078 - - Benzoate carboxyl methyltransferase, putative [Ricinus communis]
18 Hb_016671_020 0.0300724793 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_014115_020 0.0303957375 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
20 Hb_099058_020 0.0313324882 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_003694_070 Hb_003694_070 Hb_007111_020 Hb_007111_020 Hb_003694_070--Hb_007111_020 Hb_003463_040 Hb_003463_040 Hb_003694_070--Hb_003463_040 Hb_162933_010 Hb_162933_010 Hb_003694_070--Hb_162933_010 Hb_024128_010 Hb_024128_010 Hb_003694_070--Hb_024128_010 Hb_028105_020 Hb_028105_020 Hb_003694_070--Hb_028105_020 Hb_139518_020 Hb_139518_020 Hb_003694_070--Hb_139518_020 Hb_007111_020--Hb_024128_010 Hb_007111_020--Hb_139518_020 Hb_002417_040 Hb_002417_040 Hb_007111_020--Hb_002417_040 Hb_047623_010 Hb_047623_010 Hb_007111_020--Hb_047623_010 Hb_007111_020--Hb_003463_040 Hb_003463_040--Hb_162933_010 Hb_003463_040--Hb_028105_020 Hb_003463_040--Hb_024128_010 Hb_003463_040--Hb_139518_020 Hb_162933_010--Hb_028105_020 Hb_162933_010--Hb_007111_020 Hb_017279_030 Hb_017279_030 Hb_162933_010--Hb_017279_030 Hb_162933_010--Hb_024128_010 Hb_024128_010--Hb_139518_020 Hb_024128_010--Hb_002417_040 Hb_024128_010--Hb_047623_010 Hb_171554_060 Hb_171554_060 Hb_024128_010--Hb_171554_060 Hb_028105_020--Hb_017279_030 Hb_028105_020--Hb_007111_020 Hb_013874_010 Hb_013874_010 Hb_028105_020--Hb_013874_010 Hb_139518_020--Hb_002417_040 Hb_139518_020--Hb_047623_010 Hb_139518_020--Hb_171554_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.0197611
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0692017

CAGE analysis