Hb_003697_030

Information

Type transcription factor
Description TF Family: SET
Location Contig3697: 71802-79611
Sequence    

Annotation

kegg
ID tcc:TCM_007764
description Histone-lysine N-methyltransferase ATXR2 isoform 1
nr
ID XP_012086379.1
description PREDICTED: histone-lysine N-methyltransferase ATXR2 isoform X1 [Jatropha curcas]
swissprot
ID Q5PP37
description Histone-lysine N-methyltransferase ATXR2 OS=Arabidopsis thaliana GN=ATXR2 PE=2 SV=1
trembl
ID A0A067K0T2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22895 PE=4 SV=1
Gene Ontology
ID GO:0005515
description histone-lysine n-methyltransferase atxr2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38010: 71729-76365 , PASA_asmbl_38011: 76451-78039 , PASA_asmbl_38012: 78214-79604
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003697_030 0.0 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ATXR2 isoform X1 [Jatropha curcas]
2 Hb_023001_060 0.0747880727 - - PREDICTED: importin-11 [Jatropha curcas]
3 Hb_005490_030 0.0907779195 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 2 isoform X3 [Jatropha curcas]
4 Hb_021443_100 0.0945946218 - - -
5 Hb_001344_010 0.0963123608 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI11 [Jatropha curcas]
6 Hb_003777_310 0.1018731489 - - conserved hypothetical protein [Ricinus communis]
7 Hb_004920_120 0.1027025555 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001789_070 0.1030980923 - - PREDICTED: probable prolyl 4-hydroxylase 12 [Jatropha curcas]
9 Hb_002445_120 0.1051813331 - - secretory carrier membrane protein, putative [Ricinus communis]
10 Hb_004127_030 0.1072956231 - - putative Rab geranylgeranyl transferase type II beta subunit family protein [Populus trichocarpa]
11 Hb_003092_030 0.1076901429 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 3 [Jatropha curcas]
12 Hb_001369_690 0.1082179251 - - PREDICTED: hypersensitive-induced response protein 4 [Jatropha curcas]
13 Hb_003206_070 0.1092211929 - - organic anion transporter, putative [Ricinus communis]
14 Hb_000056_260 0.1107747132 - - hypothetical protein CICLE_v10033822mg [Citrus clementina]
15 Hb_021238_050 0.1115953532 - - conserved hypothetical protein [Ricinus communis]
16 Hb_024714_100 0.1142926279 - - PREDICTED: alkylated DNA repair protein alkB homolog 8 isoform X1 [Jatropha curcas]
17 Hb_001584_190 0.114539852 - - clathrin coat adaptor ap3 medium chain, putative [Ricinus communis]
18 Hb_000580_190 0.1151237794 - - PREDICTED: methionine aminopeptidase 1A isoform X1 [Jatropha curcas]
19 Hb_001009_170 0.1157963047 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
20 Hb_003470_090 0.1164349413 - - PREDICTED: pumilio homolog 12 [Jatropha curcas]

Gene co-expression network

sample Hb_003697_030 Hb_003697_030 Hb_023001_060 Hb_023001_060 Hb_003697_030--Hb_023001_060 Hb_005490_030 Hb_005490_030 Hb_003697_030--Hb_005490_030 Hb_021443_100 Hb_021443_100 Hb_003697_030--Hb_021443_100 Hb_001344_010 Hb_001344_010 Hb_003697_030--Hb_001344_010 Hb_003777_310 Hb_003777_310 Hb_003697_030--Hb_003777_310 Hb_004920_120 Hb_004920_120 Hb_003697_030--Hb_004920_120 Hb_023001_060--Hb_001344_010 Hb_023001_060--Hb_003777_310 Hb_023001_060--Hb_005490_030 Hb_005054_100 Hb_005054_100 Hb_023001_060--Hb_005054_100 Hb_000318_290 Hb_000318_290 Hb_023001_060--Hb_000318_290 Hb_001009_170 Hb_001009_170 Hb_005490_030--Hb_001009_170 Hb_005490_030--Hb_001344_010 Hb_000172_290 Hb_000172_290 Hb_005490_030--Hb_000172_290 Hb_000749_220 Hb_000749_220 Hb_005490_030--Hb_000749_220 Hb_005490_030--Hb_005054_100 Hb_001268_050 Hb_001268_050 Hb_021443_100--Hb_001268_050 Hb_021443_100--Hb_023001_060 Hb_021443_100--Hb_004920_120 Hb_000056_260 Hb_000056_260 Hb_021443_100--Hb_000056_260 Hb_003470_090 Hb_003470_090 Hb_021443_100--Hb_003470_090 Hb_001344_010--Hb_005054_100 Hb_000169_090 Hb_000169_090 Hb_001344_010--Hb_000169_090 Hb_000700_110 Hb_000700_110 Hb_001344_010--Hb_000700_110 Hb_001344_010--Hb_003777_310 Hb_003777_310--Hb_000318_290 Hb_002445_120 Hb_002445_120 Hb_003777_310--Hb_002445_120 Hb_005170_040 Hb_005170_040 Hb_003777_310--Hb_005170_040 Hb_000608_320 Hb_000608_320 Hb_003777_310--Hb_000608_320 Hb_004032_150 Hb_004032_150 Hb_003777_310--Hb_004032_150 Hb_004920_120--Hb_001009_170 Hb_004920_120--Hb_005490_030 Hb_015934_070 Hb_015934_070 Hb_004920_120--Hb_015934_070 Hb_061090_010 Hb_061090_010 Hb_004920_120--Hb_061090_010 Hb_004218_110 Hb_004218_110 Hb_004920_120--Hb_004218_110 Hb_025240_040 Hb_025240_040 Hb_004920_120--Hb_025240_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.58323 1.1039 2.70799 6.57933 5.06863 9.46983
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.14858 5.04322 8.14001 6.30355 3.69623

CAGE analysis