Hb_003697_040

Information

Type -
Description -
Location Contig3697: 80609-82255
Sequence    

Annotation

kegg
ID -
description -
nr
ID KJB31817.1
description hypothetical protein B456_005G209600 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0D2NG87
description Gossypium raimondii chromosome 5, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_005G209600 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003697_040 0.0 - - hypothetical protein B456_005G209600 [Gossypium raimondii]
2 Hb_000477_060 0.0401783371 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
3 Hb_003605_090 0.048796217 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105632419 [Jatropha curcas]
4 Hb_003053_020 0.0588176555 - - PREDICTED: STE20/SPS1-related proline-alanine-rich protein kinase [Jatropha curcas]
5 Hb_004934_100 0.0631636512 - - conserved hypothetical protein [Ricinus communis]
6 Hb_004889_010 0.0634409882 - - Vacuolar protein sorting-associated protein-like protein [Medicago truncatula]
7 Hb_000783_020 0.0661565757 - - PREDICTED: glycerol-3-phosphate dehydrogenase SDP6, mitochondrial [Jatropha curcas]
8 Hb_000016_160 0.0677625518 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48 [Jatropha curcas]
9 Hb_005488_200 0.0687949271 - - PREDICTED: uncharacterized protein LOC105632499 isoform X1 [Jatropha curcas]
10 Hb_000363_360 0.0688208271 - - hypothetical protein PRUPE_ppa009146mg [Prunus persica]
11 Hb_003349_090 0.0692717509 - - PREDICTED: diphthamide biosynthesis protein 2 [Jatropha curcas]
12 Hb_009615_070 0.0699457397 - - type X protein phosphatase-II [Populus trichocarpa]
13 Hb_004837_160 0.0699840726 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform X1 [Jatropha curcas]
14 Hb_000120_460 0.0713496822 - - PREDICTED: thioredoxin reductase NTRB-like [Jatropha curcas]
15 Hb_008453_030 0.071569379 - - Thioredoxin superfamily protein [Theobroma cacao]
16 Hb_000436_130 0.0725565525 - - PREDICTED: probable protein phosphatase 2C 60 [Jatropha curcas]
17 Hb_002620_020 0.0729058951 transcription factor TF Family: bZIP DNA binding protein, putative [Ricinus communis]
18 Hb_000291_080 0.0731501529 - - Vacuolar protein sorting-associated protein VPS9, putative [Ricinus communis]
19 Hb_001545_170 0.0742224929 - - PREDICTED: cleavage stimulating factor 64 isoform X1 [Jatropha curcas]
20 Hb_006420_080 0.0744715047 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003697_040 Hb_003697_040 Hb_000477_060 Hb_000477_060 Hb_003697_040--Hb_000477_060 Hb_003605_090 Hb_003605_090 Hb_003697_040--Hb_003605_090 Hb_003053_020 Hb_003053_020 Hb_003697_040--Hb_003053_020 Hb_004934_100 Hb_004934_100 Hb_003697_040--Hb_004934_100 Hb_004889_010 Hb_004889_010 Hb_003697_040--Hb_004889_010 Hb_000783_020 Hb_000783_020 Hb_003697_040--Hb_000783_020 Hb_000477_060--Hb_003605_090 Hb_000363_360 Hb_000363_360 Hb_000477_060--Hb_000363_360 Hb_000116_270 Hb_000116_270 Hb_000477_060--Hb_000116_270 Hb_000477_060--Hb_004934_100 Hb_000749_220 Hb_000749_220 Hb_000477_060--Hb_000749_220 Hb_000703_350 Hb_000703_350 Hb_003605_090--Hb_000703_350 Hb_009615_070 Hb_009615_070 Hb_003605_090--Hb_009615_070 Hb_003605_090--Hb_004934_100 Hb_001252_130 Hb_001252_130 Hb_003605_090--Hb_001252_130 Hb_003053_020--Hb_000783_020 Hb_019263_020 Hb_019263_020 Hb_003053_020--Hb_019263_020 Hb_000985_030 Hb_000985_030 Hb_003053_020--Hb_000985_030 Hb_007904_260 Hb_007904_260 Hb_003053_020--Hb_007904_260 Hb_011534_030 Hb_011534_030 Hb_003053_020--Hb_011534_030 Hb_000599_250 Hb_000599_250 Hb_004934_100--Hb_000599_250 Hb_008453_030 Hb_008453_030 Hb_004934_100--Hb_008453_030 Hb_001489_080 Hb_001489_080 Hb_004934_100--Hb_001489_080 Hb_000421_220 Hb_000421_220 Hb_004934_100--Hb_000421_220 Hb_004934_100--Hb_000985_030 Hb_005551_040 Hb_005551_040 Hb_004889_010--Hb_005551_040 Hb_004889_010--Hb_009615_070 Hb_003349_090 Hb_003349_090 Hb_004889_010--Hb_003349_090 Hb_034380_020 Hb_034380_020 Hb_004889_010--Hb_034380_020 Hb_089032_030 Hb_089032_030 Hb_004889_010--Hb_089032_030 Hb_000783_020--Hb_000985_030 Hb_000783_020--Hb_001489_080 Hb_003688_150 Hb_003688_150 Hb_000783_020--Hb_003688_150 Hb_007416_060 Hb_007416_060 Hb_000783_020--Hb_007416_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.8564 7.71097 8.32837 15.5718 9.81839 14.5863
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.178 24.9371 23.6534 13.6793 13.2329

CAGE analysis