Hb_003697_050

Information

Type transcription factor
Description TF Family: C3H
Location Contig3697: 94760-99784
Sequence    

Annotation

kegg
ID rcu:RCOM_1550840
description hypothetical protein
nr
ID XP_012086378.1
description PREDICTED: zinc finger CCCH domain-containing protein 13 [Jatropha curcas]
swissprot
ID Q93XW7
description Zinc finger CCCH domain-containing protein 40 OS=Arabidopsis thaliana GN=At3g21810 PE=1 SV=1
trembl
ID A0A067K235
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22894 PE=4 SV=1
Gene Ontology
ID GO:0046872
description zinc finger ccch domain-containing protein 13-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38014: 99408-99625
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003697_050 0.0 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 13 [Jatropha curcas]
2 Hb_002284_230 0.0637348385 - - PREDICTED: uncharacterized protein At5g43822 [Jatropha curcas]
3 Hb_001268_050 0.0769864411 - - translocon-associated protein, beta subunit precursor, putative [Ricinus communis]
4 Hb_002735_050 0.0823667023 - - PREDICTED: thiamine-repressible mitochondrial transport protein THI74 isoform X1 [Jatropha curcas]
5 Hb_025098_010 0.0928992481 - - PREDICTED: protoheme IX farnesyltransferase, mitochondrial isoform X2 [Jatropha curcas]
6 Hb_001390_130 0.0929857982 - - hypothetical protein POPTR_0009s08590g [Populus trichocarpa]
7 Hb_094836_010 0.0934368515 - - PREDICTED: uncharacterized protein LOC105638026 [Jatropha curcas]
8 Hb_004935_060 0.0935071473 - - Uncharacterized protein isoform 2 [Theobroma cacao]
9 Hb_000140_280 0.0941387682 - - hypothetical protein B456_001G157900 [Gossypium raimondii]
10 Hb_000212_450 0.0952300997 - - PREDICTED: basic leucine zipper and W2 domain-containing protein 2 [Jatropha curcas]
11 Hb_003633_050 0.0961856231 - - hypothetical protein B456_013G125900 [Gossypium raimondii]
12 Hb_000028_350 0.1013042792 - - PREDICTED: uncharacterized protein LOC105634642 [Jatropha curcas]
13 Hb_002289_080 0.1016120665 - - hypothetical protein POPTR_0016s05590g [Populus trichocarpa]
14 Hb_019654_030 0.1027675597 - - maoC-like dehydratase domain-containing family protein [Populus trichocarpa]
15 Hb_086085_020 0.1029348848 - - Non-imprinted in Prader-Willi/Angelman syndrome region protein isoform 3 [Theobroma cacao]
16 Hb_007416_090 0.1034935423 - - UDP-sugar transporter, putative [Ricinus communis]
17 Hb_000060_050 0.1048621779 - - PREDICTED: uncharacterized protein LOC105649718 [Jatropha curcas]
18 Hb_003141_070 0.1050609189 - - PREDICTED: probable protein phosphatase 2C 51 [Jatropha curcas]
19 Hb_009193_030 0.1059983359 - - hypothetical protein POPTR_0010s16620g [Populus trichocarpa]
20 Hb_000310_090 0.1078786599 - - 3-oxoacyl-[acyl-carrier-protein] synthase 3 A, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_003697_050 Hb_003697_050 Hb_002284_230 Hb_002284_230 Hb_003697_050--Hb_002284_230 Hb_001268_050 Hb_001268_050 Hb_003697_050--Hb_001268_050 Hb_002735_050 Hb_002735_050 Hb_003697_050--Hb_002735_050 Hb_025098_010 Hb_025098_010 Hb_003697_050--Hb_025098_010 Hb_001390_130 Hb_001390_130 Hb_003697_050--Hb_001390_130 Hb_094836_010 Hb_094836_010 Hb_003697_050--Hb_094836_010 Hb_019654_030 Hb_019654_030 Hb_002284_230--Hb_019654_030 Hb_000046_350 Hb_000046_350 Hb_002284_230--Hb_000046_350 Hb_002284_230--Hb_025098_010 Hb_003633_050 Hb_003633_050 Hb_002284_230--Hb_003633_050 Hb_003126_070 Hb_003126_070 Hb_002284_230--Hb_003126_070 Hb_003502_090 Hb_003502_090 Hb_001268_050--Hb_003502_090 Hb_000083_170 Hb_000083_170 Hb_001268_050--Hb_000083_170 Hb_000479_190 Hb_000479_190 Hb_001268_050--Hb_000479_190 Hb_021443_100 Hb_021443_100 Hb_001268_050--Hb_021443_100 Hb_000326_090 Hb_000326_090 Hb_001268_050--Hb_000326_090 Hb_004935_060 Hb_004935_060 Hb_002735_050--Hb_004935_060 Hb_003141_070 Hb_003141_070 Hb_002735_050--Hb_003141_070 Hb_002289_080 Hb_002289_080 Hb_002735_050--Hb_002289_080 Hb_002735_050--Hb_002284_230 Hb_002735_050--Hb_025098_010 Hb_185255_010 Hb_185255_010 Hb_025098_010--Hb_185255_010 Hb_000310_090 Hb_000310_090 Hb_025098_010--Hb_000310_090 Hb_001307_030 Hb_001307_030 Hb_025098_010--Hb_001307_030 Hb_005144_050 Hb_005144_050 Hb_025098_010--Hb_005144_050 Hb_025098_010--Hb_002289_080 Hb_008841_020 Hb_008841_020 Hb_025098_010--Hb_008841_020 Hb_000291_080 Hb_000291_080 Hb_001390_130--Hb_000291_080 Hb_002111_040 Hb_002111_040 Hb_001390_130--Hb_002111_040 Hb_003697_040 Hb_003697_040 Hb_001390_130--Hb_003697_040 Hb_005488_200 Hb_005488_200 Hb_001390_130--Hb_005488_200 Hb_007416_060 Hb_007416_060 Hb_001390_130--Hb_007416_060 Hb_000538_070 Hb_000538_070 Hb_001390_130--Hb_000538_070 Hb_002620_020 Hb_002620_020 Hb_094836_010--Hb_002620_020 Hb_001936_010 Hb_001936_010 Hb_094836_010--Hb_001936_010 Hb_004078_040 Hb_004078_040 Hb_094836_010--Hb_004078_040 Hb_000614_250 Hb_000614_250 Hb_094836_010--Hb_000614_250 Hb_001377_490 Hb_001377_490 Hb_094836_010--Hb_001377_490 Hb_004837_160 Hb_004837_160 Hb_094836_010--Hb_004837_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.90163 2.19959 2.4373 10.1672 3.31269 6.36969
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.75669 7.32376 7.66856 6.47061 5.24144

CAGE analysis