Hb_003702_010

Information

Type -
Description -
Location Contig3702: 16423-18190
Sequence    

Annotation

kegg
ID rcu:RCOM_1014270
description triacylglycerol lipase, putative
nr
ID XP_012092422.1
description PREDICTED: phospholipase A1-II 1-like [Jatropha curcas]
swissprot
ID O59952
description Lipase OS=Thermomyces lanuginosus GN=LIP PE=1 SV=1
trembl
ID A0A067JB88
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21542 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38032: 16361-18173
cDNA
(Sanger)
(ID:Location)		 019_C21.ab1: 17751-18166 , 030_N11.ab1: 17363-18166 , 041_K17.ab1: 17299-18166 , 044_I24.ab1: 17237-18166 , 053_D02.ab1: 17261-18165

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003702_010 0.0 - - PREDICTED: phospholipase A1-II 1-like [Jatropha curcas]
2 Hb_000023_170 0.020932118 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2-like [Jatropha curcas]
3 Hb_009189_090 0.0328961914 - - protein phosphatase-2c, putative [Ricinus communis]
4 Hb_155874_020 0.038889758 - - Chain A, Anomalous Substructure Of Hydroxynitrile Lyase
5 Hb_132840_060 0.0435332435 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH57-like [Jatropha curcas]
6 Hb_005357_210 0.0472429453 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein MERISTEM L1 [Jatropha curcas]
7 Hb_000853_340 0.0475717657 - - PREDICTED: kynurenine--oxoglutarate transaminase 1-like isoform X2 [Populus euphratica]
8 Hb_008195_100 0.048150825 transcription factor TF Family: C2C2-YABBY PREDICTED: protein YABBY 4 [Vitis vinifera]
9 Hb_008032_010 0.0521795904 - - Chain A, Anomalous Substructure Of Hydroxynitrile Lyase
10 Hb_000173_330 0.0579697043 - - PREDICTED: glutamine synthetase leaf isozyme, chloroplastic [Vitis vinifera]
11 Hb_001329_060 0.062459924 - - Polygalacturonase precursor, putative [Ricinus communis]
12 Hb_025048_050 0.0629823515 - - PREDICTED: protein PHYTOCHROME KINASE SUBSTRATE 3 [Jatropha curcas]
13 Hb_006355_100 0.0670406369 - - hypothetical protein glysoja_002455 [Glycine soja]
14 Hb_001946_070 0.0686230033 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
15 Hb_003729_050 0.0731777985 - - PREDICTED: vacuolar iron transporter 1-like isoform X1 [Jatropha curcas]
16 Hb_019762_030 0.0739227553 - - hypothetical protein POPTR_0002s08720g [Populus trichocarpa]
17 Hb_003411_070 0.0756299564 - - PREDICTED: protein NRT1/ PTR FAMILY 3.1 [Populus euphratica]
18 Hb_006649_100 0.0785079871 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
19 Hb_000187_100 0.080850693 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]
20 Hb_009293_030 0.081967228 - - PREDICTED: salicylate carboxymethyltransferase [Jatropha curcas]

Gene co-expression network

sample Hb_003702_010 Hb_003702_010 Hb_000023_170 Hb_000023_170 Hb_003702_010--Hb_000023_170 Hb_009189_090 Hb_009189_090 Hb_003702_010--Hb_009189_090 Hb_155874_020 Hb_155874_020 Hb_003702_010--Hb_155874_020 Hb_132840_060 Hb_132840_060 Hb_003702_010--Hb_132840_060 Hb_005357_210 Hb_005357_210 Hb_003702_010--Hb_005357_210 Hb_000853_340 Hb_000853_340 Hb_003702_010--Hb_000853_340 Hb_000023_170--Hb_009189_090 Hb_000023_170--Hb_132840_060 Hb_008032_010 Hb_008032_010 Hb_000023_170--Hb_008032_010 Hb_000023_170--Hb_155874_020 Hb_000023_170--Hb_005357_210 Hb_009189_090--Hb_008032_010 Hb_009189_090--Hb_132840_060 Hb_006355_100 Hb_006355_100 Hb_009189_090--Hb_006355_100 Hb_009189_090--Hb_005357_210 Hb_155874_020--Hb_132840_060 Hb_155874_020--Hb_000853_340 Hb_008195_100 Hb_008195_100 Hb_155874_020--Hb_008195_100 Hb_155874_020--Hb_008032_010 Hb_132840_060--Hb_008032_010 Hb_003729_050 Hb_003729_050 Hb_132840_060--Hb_003729_050 Hb_132840_060--Hb_006355_100 Hb_025048_050 Hb_025048_050 Hb_005357_210--Hb_025048_050 Hb_001946_070 Hb_001946_070 Hb_005357_210--Hb_001946_070 Hb_001329_060 Hb_001329_060 Hb_005357_210--Hb_001329_060 Hb_019762_030 Hb_019762_030 Hb_000853_340--Hb_019762_030 Hb_000853_340--Hb_008195_100 Hb_000853_340--Hb_000023_170 Hb_000853_340--Hb_132840_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0214282 67.1812 5.40177 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 17.9934

CAGE analysis