Hb_003702_060

Information

Type -
Description -
Location Contig3702: 67061-76457
Sequence    

Annotation

kegg
ID rcu:RCOM_1014620
description hypothetical protein
nr
ID XP_012091746.1
description PREDICTED: protein trichome birefringence-like 38 [Jatropha curcas]
swissprot
ID Q8VY22
description Protein trichome birefringence-like 38 OS=Arabidopsis thaliana GN=TBL38 PE=2 SV=1
trembl
ID A0A067JB93
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21547 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38035: 66857-76476
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003702_060 0.0 - - PREDICTED: protein trichome birefringence-like 38 [Jatropha curcas]
2 Hb_029920_010 0.0772155785 - - pepsin A, putative [Ricinus communis]
3 Hb_000000_390 0.1060717357 - - PREDICTED: uncharacterized protein LOC105633753 [Jatropha curcas]
4 Hb_051663_010 0.1120561098 - - receptor-kinase, putative [Ricinus communis]
5 Hb_004204_060 0.1132512602 transcription factor TF Family: NAC NAC transcription factor 058, partial [Jatropha curcas]
6 Hb_007850_020 0.1184135274 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000922_200 0.1186609595 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0012s08280g [Populus trichocarpa]
8 Hb_001516_010 0.1191042907 - - PREDICTED: guanylate kinase 2 [Jatropha curcas]
9 Hb_143629_180 0.1192762827 transcription factor TF Family: MYB myb family transcription factor family protein [Populus trichocarpa]
10 Hb_000152_350 0.119622869 - - PREDICTED: enolase [Jatropha curcas]
11 Hb_019613_030 0.1219501487 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase CLF [Jatropha curcas]
12 Hb_003163_010 0.1219826339 - - hypothetical protein POPTR_0012s02920g [Populus trichocarpa]
13 Hb_005018_010 0.1221842092 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
14 Hb_000424_130 0.1223615203 - - PREDICTED: monoacylglycerol lipase abhd6-B-like [Jatropha curcas]
15 Hb_041692_010 0.1231346758 - - annexin [Manihot esculenta]
16 Hb_000020_090 0.1235865025 - - hypothetical protein JCGZ_09084 [Jatropha curcas]
17 Hb_002078_330 0.1240979826 - - lipid binding protein, putative [Ricinus communis]
18 Hb_000156_110 0.1249570095 - - Uncharacterized protein TCM_029490 [Theobroma cacao]
19 Hb_000985_160 0.1272020614 - - PREDICTED: cytochrome P450 724B1-like [Jatropha curcas]
20 Hb_002704_060 0.1275693396 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]

Gene co-expression network

sample Hb_003702_060 Hb_003702_060 Hb_029920_010 Hb_029920_010 Hb_003702_060--Hb_029920_010 Hb_000000_390 Hb_000000_390 Hb_003702_060--Hb_000000_390 Hb_051663_010 Hb_051663_010 Hb_003702_060--Hb_051663_010 Hb_004204_060 Hb_004204_060 Hb_003702_060--Hb_004204_060 Hb_007850_020 Hb_007850_020 Hb_003702_060--Hb_007850_020 Hb_000922_200 Hb_000922_200 Hb_003702_060--Hb_000922_200 Hb_000300_110 Hb_000300_110 Hb_029920_010--Hb_000300_110 Hb_000152_350 Hb_000152_350 Hb_029920_010--Hb_000152_350 Hb_000424_130 Hb_000424_130 Hb_029920_010--Hb_000424_130 Hb_127263_010 Hb_127263_010 Hb_029920_010--Hb_127263_010 Hb_137222_010 Hb_137222_010 Hb_029920_010--Hb_137222_010 Hb_000538_090 Hb_000538_090 Hb_000000_390--Hb_000538_090 Hb_000000_390--Hb_051663_010 Hb_004635_120 Hb_004635_120 Hb_000000_390--Hb_004635_120 Hb_012395_240 Hb_012395_240 Hb_000000_390--Hb_012395_240 Hb_002078_330 Hb_002078_330 Hb_000000_390--Hb_002078_330 Hb_001638_200 Hb_001638_200 Hb_000000_390--Hb_001638_200 Hb_001516_010 Hb_001516_010 Hb_051663_010--Hb_001516_010 Hb_111985_100 Hb_111985_100 Hb_051663_010--Hb_111985_100 Hb_051663_010--Hb_000922_200 Hb_032920_020 Hb_032920_020 Hb_051663_010--Hb_032920_020 Hb_009486_050 Hb_009486_050 Hb_051663_010--Hb_009486_050 Hb_004204_060--Hb_007850_020 Hb_000985_160 Hb_000985_160 Hb_004204_060--Hb_000985_160 Hb_012035_010 Hb_012035_010 Hb_004204_060--Hb_012035_010 Hb_004204_060--Hb_000152_350 Hb_012655_010 Hb_012655_010 Hb_004204_060--Hb_012655_010 Hb_004204_060--Hb_002078_330 Hb_007850_020--Hb_000985_160 Hb_007850_020--Hb_012035_010 Hb_000487_080 Hb_000487_080 Hb_007850_020--Hb_000487_080 Hb_007850_020--Hb_002078_330 Hb_002043_020 Hb_002043_020 Hb_007850_020--Hb_002043_020 Hb_000951_150 Hb_000951_150 Hb_000922_200--Hb_000951_150 Hb_000922_200--Hb_000000_390 Hb_000922_200--Hb_004635_120 Hb_000922_200--Hb_001638_200 Hb_000922_200--Hb_012395_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.248132 16.4421 12.403 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.191582 0.301413 0.393433 1.38734 16.2607

CAGE analysis