Hb_003710_020

Information

Type -
Description -
Location Contig3710: 76578-108152
Sequence    

Annotation

kegg
ID cit:102620852
description probable LRR receptor-like serine/threonine-protein kinase At1g53430-like
nr
ID XP_012080880.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 isoform X1 [Jatropha curcas]
swissprot
ID C0LGG7
description Probable LRR receptor-like serine/threonine-protein kinase At1g53420 OS=Arabidopsis thaliana GN=At1g53420 PE=2 SV=2
trembl
ID A0A067KFH5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16252 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38048: 76601-79488 , PASA_asmbl_38049: 84048-96650 , PASA_asmbl_38050: 96845-108133
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003710_020 0.0 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53440 isoform X1 [Jatropha curcas]
2 Hb_143766_080 0.0926570204 - - PREDICTED: uncharacterized protein LOC105637797 isoform X1 [Jatropha curcas]
3 Hb_080477_080 0.0934151139 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 isoform X1 [Gossypium raimondii]
4 Hb_000062_530 0.097988424 - - PREDICTED: GDP-mannose transporter GONST3-like [Populus euphratica]
5 Hb_034507_060 0.1067563656 - - PREDICTED: UPF0503 protein At3g09070, chloroplastic-like [Citrus sinensis]
6 Hb_001545_130 0.1125331118 - - sur2 hydroxylase/desaturase, putative [Ricinus communis]
7 Hb_004522_030 0.1158084249 - - PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating 3 [Jatropha curcas]
8 Hb_000928_120 0.1230602572 - - PREDICTED: benzyl alcohol O-benzoyltransferase-like [Jatropha curcas]
9 Hb_012760_090 0.1245583236 - - Aspartic proteinase-like protein 1 [Morus notabilis]
10 Hb_001054_090 0.1268930681 - - Potassium channel SKOR, putative [Ricinus communis]
11 Hb_001754_050 0.128511856 - - protein arginine n-methyltransferase, putative [Ricinus communis]
12 Hb_147245_010 0.1296529003 - - casein kinase, putative [Ricinus communis]
13 Hb_004218_130 0.1342418099 - - PREDICTED: uridine 5'-monophosphate synthase [Jatropha curcas]
14 Hb_000139_140 0.1363982051 - - Acyl-CoA synthetase [Ricinus communis]
15 Hb_007537_030 0.1367371237 - - PREDICTED: gamma aminobutyrate transaminase 3, chloroplastic [Jatropha curcas]
16 Hb_172706_020 0.1411154619 - - PREDICTED: protein ABIL2 [Jatropha curcas]
17 Hb_000735_080 0.1413771263 - - PREDICTED: probable xyloglucan glycosyltransferase 6 [Jatropha curcas]
18 Hb_005694_180 0.142101781 - - PREDICTED: cytochrome b5 [Jatropha curcas]
19 Hb_158092_040 0.1439164647 - - PREDICTED: uncharacterized protein LOC105647294 [Jatropha curcas]
20 Hb_000002_360 0.1484770239 - - hypothetical protein POPTR_0008s16470g [Populus trichocarpa]

Gene co-expression network

sample Hb_003710_020 Hb_003710_020 Hb_143766_080 Hb_143766_080 Hb_003710_020--Hb_143766_080 Hb_080477_080 Hb_080477_080 Hb_003710_020--Hb_080477_080 Hb_000062_530 Hb_000062_530 Hb_003710_020--Hb_000062_530 Hb_034507_060 Hb_034507_060 Hb_003710_020--Hb_034507_060 Hb_001545_130 Hb_001545_130 Hb_003710_020--Hb_001545_130 Hb_004522_030 Hb_004522_030 Hb_003710_020--Hb_004522_030 Hb_001754_050 Hb_001754_050 Hb_143766_080--Hb_001754_050 Hb_004129_010 Hb_004129_010 Hb_143766_080--Hb_004129_010 Hb_143766_080--Hb_004522_030 Hb_000116_240 Hb_000116_240 Hb_143766_080--Hb_000116_240 Hb_004883_020 Hb_004883_020 Hb_143766_080--Hb_004883_020 Hb_158092_040 Hb_158092_040 Hb_080477_080--Hb_158092_040 Hb_080477_080--Hb_004522_030 Hb_080477_080--Hb_143766_080 Hb_001054_090 Hb_001054_090 Hb_080477_080--Hb_001054_090 Hb_080477_080--Hb_000062_530 Hb_000062_530--Hb_001545_130 Hb_004109_050 Hb_004109_050 Hb_000062_530--Hb_004109_050 Hb_000152_710 Hb_000152_710 Hb_000062_530--Hb_000152_710 Hb_019280_020 Hb_019280_020 Hb_000062_530--Hb_019280_020 Hb_012362_030 Hb_012362_030 Hb_000062_530--Hb_012362_030 Hb_023226_030 Hb_023226_030 Hb_034507_060--Hb_023226_030 Hb_012760_090 Hb_012760_090 Hb_034507_060--Hb_012760_090 Hb_005694_180 Hb_005694_180 Hb_034507_060--Hb_005694_180 Hb_004218_130 Hb_004218_130 Hb_034507_060--Hb_004218_130 Hb_010050_020 Hb_010050_020 Hb_034507_060--Hb_010050_020 Hb_001545_130--Hb_004218_130 Hb_147245_010 Hb_147245_010 Hb_001545_130--Hb_147245_010 Hb_000003_030 Hb_000003_030 Hb_001545_130--Hb_000003_030 Hb_001545_130--Hb_004109_050 Hb_006351_020 Hb_006351_020 Hb_001545_130--Hb_006351_020 Hb_004032_210 Hb_004032_210 Hb_001545_130--Hb_004032_210 Hb_000928_120 Hb_000928_120 Hb_004522_030--Hb_000928_120 Hb_004522_030--Hb_010050_020 Hb_007537_030 Hb_007537_030 Hb_004522_030--Hb_007537_030 Hb_000622_330 Hb_000622_330 Hb_004522_030--Hb_000622_330 Hb_003001_130 Hb_003001_130 Hb_004522_030--Hb_003001_130 Hb_004522_030--Hb_034507_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.997273 5.31158 7.33269 14.4384 0.182722 1.04292
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.32197 1.48891 2.21487 7.50368 4.18638

CAGE analysis