Hb_003713_010

Information

Type -
Description -
Location Contig3713: 11824-15786
Sequence    

Annotation

kegg
ID rcu:RCOM_1711490
description hypothetical protein
nr
ID XP_002524154.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9CM71
description Protein TolB OS=Pasteurella multocida (strain Pm70) GN=tolB PE=3 SV=1
trembl
ID B9SDT5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1711490 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003713_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000500_070 0.2096540343 - - hypothetical protein POPTR_0015s12340g [Populus trichocarpa]
3 Hb_001232_060 0.2102776621 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000815_220 0.2141796025 - - conserved hypothetical protein [Ricinus communis]
5 Hb_067118_010 0.2190218661 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
6 Hb_000160_010 0.2216225346 - - PREDICTED: uncharacterized protein LOC105638816 [Jatropha curcas]
7 Hb_000139_110 0.2243100083 - - PREDICTED: mavicyanin [Jatropha curcas]
8 Hb_146255_010 0.224650837 - - PREDICTED: uncharacterized protein LOC105643649 [Jatropha curcas]
9 Hb_000313_080 0.2257365779 rubber biosynthesis Gene Name: CPT3 cis-prenyltransferase 3 [Hevea brasiliensis]
10 Hb_000049_080 0.2306932164 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
11 Hb_001276_030 0.2320676297 - - PREDICTED: uncharacterized protein LOC104881333 [Vitis vinifera]
12 Hb_002374_540 0.2328968083 - - RecName: Full=Esterase; AltName: Full=Early nodule-specific protein homolog; AltName: Full=Latex allergen Hev b 13; AltName: Allergen=Hev b 13; Flags: Precursor [Hevea brasiliensis]
13 Hb_000313_330 0.2331793017 - - PREDICTED: glucan endo-1,3-beta-glucosidase [Jatropha curcas]
14 Hb_006061_030 0.233445995 - - PREDICTED: fe(2+) transport protein 1-like [Jatropha curcas]
15 Hb_001741_110 0.2394831626 rubber biosynthesis Gene Name: REF7 REF/SRPP-like protein [Glycine soja]
16 Hb_007311_050 0.2469937545 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000392_060 0.2498228463 - - hypothetical protein JCGZ_11629 [Jatropha curcas]
18 Hb_001269_180 0.2613836436 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
19 Hb_005357_170 0.2616984928 - - Pectinesterase precursor, putative [Ricinus communis]
20 Hb_000622_190 0.2651477368 - - PREDICTED: uncharacterized protein LOC105642890 [Jatropha curcas]

Gene co-expression network

sample Hb_003713_010 Hb_003713_010 Hb_000500_070 Hb_000500_070 Hb_003713_010--Hb_000500_070 Hb_001232_060 Hb_001232_060 Hb_003713_010--Hb_001232_060 Hb_000815_220 Hb_000815_220 Hb_003713_010--Hb_000815_220 Hb_067118_010 Hb_067118_010 Hb_003713_010--Hb_067118_010 Hb_000160_010 Hb_000160_010 Hb_003713_010--Hb_000160_010 Hb_000139_110 Hb_000139_110 Hb_003713_010--Hb_000139_110 Hb_000172_470 Hb_000172_470 Hb_000500_070--Hb_000172_470 Hb_006816_110 Hb_006816_110 Hb_000500_070--Hb_006816_110 Hb_005357_170 Hb_005357_170 Hb_000500_070--Hb_005357_170 Hb_001741_110 Hb_001741_110 Hb_000500_070--Hb_001741_110 Hb_000500_070--Hb_000139_110 Hb_001486_050 Hb_001486_050 Hb_000500_070--Hb_001486_050 Hb_012055_070 Hb_012055_070 Hb_001232_060--Hb_012055_070 Hb_001232_060--Hb_000160_010 Hb_001269_180 Hb_001269_180 Hb_001232_060--Hb_001269_180 Hb_001276_030 Hb_001276_030 Hb_001232_060--Hb_001276_030 Hb_004586_440 Hb_004586_440 Hb_001232_060--Hb_004586_440 Hb_001232_060--Hb_000815_220 Hb_000815_220--Hb_001276_030 Hb_000815_220--Hb_000160_010 Hb_000805_050 Hb_000805_050 Hb_000815_220--Hb_000805_050 Hb_103225_040 Hb_103225_040 Hb_000815_220--Hb_103225_040 Hb_152868_020 Hb_152868_020 Hb_000815_220--Hb_152868_020 Hb_000313_330 Hb_000313_330 Hb_067118_010--Hb_000313_330 Hb_000375_140 Hb_000375_140 Hb_067118_010--Hb_000375_140 Hb_006061_030 Hb_006061_030 Hb_067118_010--Hb_006061_030 Hb_146255_010 Hb_146255_010 Hb_067118_010--Hb_146255_010 Hb_002374_540 Hb_002374_540 Hb_067118_010--Hb_002374_540 Hb_000160_010--Hb_001276_030 Hb_000160_010--Hb_001269_180 Hb_001369_480 Hb_001369_480 Hb_000160_010--Hb_001369_480 Hb_000160_010--Hb_004586_440 Hb_000633_030 Hb_000633_030 Hb_000160_010--Hb_000633_030 Hb_000139_110--Hb_001486_050 Hb_000139_110--Hb_006816_110 Hb_034507_040 Hb_034507_040 Hb_000139_110--Hb_034507_040 Hb_005293_020 Hb_005293_020 Hb_000139_110--Hb_005293_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.500992 0 0.315726 2.91983 0.0342383 0.139595
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.062106 0 0.657656

CAGE analysis