Hb_003717_020

Information

Type -
Description -
Location Contig3717: 43600-44780
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003717_020 0.0 - - -
2 Hb_004981_010 0.1152623843 - - -
3 Hb_181402_010 0.1939722363 - - PREDICTED: uncharacterized protein LOC104905886 [Beta vulgaris subsp. vulgaris]
4 Hb_065395_020 0.2249474109 - - receptor-kinase, putative [Ricinus communis]
5 Hb_001021_050 0.2288487436 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
6 Hb_000045_060 0.2497287758 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_111985_030 0.2632664354 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
8 Hb_004566_050 0.2632665918 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
9 Hb_001318_060 0.2637603726 - - contains similarity to reverse transcriptase-like proteins [Arabidopsis thaliana]
10 Hb_003410_020 0.2640769466 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
11 Hb_034909_010 0.2640857819 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
12 Hb_010435_010 0.2644005972 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
13 Hb_071998_010 0.2675961021 - - PREDICTED: uncharacterized protein LOC105800957 [Gossypium raimondii]
14 Hb_011888_010 0.2683076424 - - Receptor like protein 46, putative [Theobroma cacao]
15 Hb_000417_330 0.2717704771 - - -
16 Hb_008576_010 0.2733306073 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
17 Hb_149253_010 0.2744560345 - - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [Gossypium arboreum]
18 Hb_003943_060 0.2746710799 - - PREDICTED: uncharacterized protein LOC105636357 [Jatropha curcas]
19 Hb_012438_020 0.2750387477 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
20 Hb_001383_040 0.2751526455 - - PREDICTED: uncharacterized protein LOC105627956 [Jatropha curcas]

Gene co-expression network

sample Hb_003717_020 Hb_003717_020 Hb_004981_010 Hb_004981_010 Hb_003717_020--Hb_004981_010 Hb_181402_010 Hb_181402_010 Hb_003717_020--Hb_181402_010 Hb_065395_020 Hb_065395_020 Hb_003717_020--Hb_065395_020 Hb_001021_050 Hb_001021_050 Hb_003717_020--Hb_001021_050 Hb_000045_060 Hb_000045_060 Hb_003717_020--Hb_000045_060 Hb_111985_030 Hb_111985_030 Hb_003717_020--Hb_111985_030 Hb_004981_010--Hb_065395_020 Hb_004981_010--Hb_001021_050 Hb_001758_030 Hb_001758_030 Hb_004981_010--Hb_001758_030 Hb_004981_010--Hb_181402_010 Hb_004981_010--Hb_000045_060 Hb_055314_010 Hb_055314_010 Hb_181402_010--Hb_055314_010 Hb_181402_010--Hb_001758_030 Hb_042463_050 Hb_042463_050 Hb_181402_010--Hb_042463_050 Hb_027204_010 Hb_027204_010 Hb_181402_010--Hb_027204_010 Hb_004235_020 Hb_004235_020 Hb_065395_020--Hb_004235_020 Hb_143398_020 Hb_143398_020 Hb_065395_020--Hb_143398_020 Hb_009888_010 Hb_009888_010 Hb_065395_020--Hb_009888_010 Hb_004678_070 Hb_004678_070 Hb_065395_020--Hb_004678_070 Hb_012538_010 Hb_012538_010 Hb_001021_050--Hb_012538_010 Hb_001021_050--Hb_143398_020 Hb_132317_010 Hb_132317_010 Hb_001021_050--Hb_132317_010 Hb_133047_030 Hb_133047_030 Hb_001021_050--Hb_133047_030 Hb_118014_010 Hb_118014_010 Hb_000045_060--Hb_118014_010 Hb_027380_250 Hb_027380_250 Hb_000045_060--Hb_027380_250 Hb_007193_050 Hb_007193_050 Hb_000045_060--Hb_007193_050 Hb_065661_010 Hb_065661_010 Hb_000045_060--Hb_065661_010 Hb_004566_050 Hb_004566_050 Hb_111985_030--Hb_004566_050 Hb_001318_060 Hb_001318_060 Hb_111985_030--Hb_001318_060 Hb_003410_020 Hb_003410_020 Hb_111985_030--Hb_003410_020 Hb_034909_010 Hb_034909_010 Hb_111985_030--Hb_034909_010 Hb_010435_010 Hb_010435_010 Hb_111985_030--Hb_010435_010 Hb_071998_010 Hb_071998_010 Hb_111985_030--Hb_071998_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.185176 0 0 0 0.0643455
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.238331

CAGE analysis