Hb_003725_010

Information

Type transcription factor
Description TF Family: C2H2
Location Contig3725: 2572-15554
Sequence    

Annotation

kegg
ID cic:CICLE_v10015448mg
description hypothetical protein
nr
ID XP_012088566.1
description PREDICTED: protein SUPPRESSOR OF FRI 4 [Jatropha curcas]
swissprot
ID Q9C5G0
description Protein SUPPRESSOR OF FRI 4 OS=Arabidopsis thaliana GN=SUF4 PE=1 SV=1
trembl
ID A0A067JJ49
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_27102 PE=4 SV=1
Gene Ontology
ID GO:0005634
description protein suppressor of fri 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38070: 2678-15557 , PASA_asmbl_38071: 14509-15444
cDNA
(Sanger)
(ID:Location)		 023_L19.ab1: 2681-13562 , 048_J18.ab1: 2681-13617

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003725_010 0.0 transcription factor TF Family: C2H2 PREDICTED: protein SUPPRESSOR OF FRI 4 [Jatropha curcas]
2 Hb_013358_060 0.0655491985 - - PREDICTED: uncharacterized protein LOC105637564 [Jatropha curcas]
3 Hb_000270_700 0.0711444009 - - PREDICTED: protease Do-like 9 [Populus euphratica]
4 Hb_024714_070 0.0725188126 - - PREDICTED: uncharacterized protein LOC105642502 [Jatropha curcas]
5 Hb_012799_150 0.0752527104 - - PREDICTED: LOW QUALITY PROTEIN: methyl-CpG-binding domain-containing protein 13 [Jatropha curcas]
6 Hb_000015_090 0.0824579811 - - PREDICTED: ACT domain-containing protein ACR9 [Jatropha curcas]
7 Hb_017914_010 0.0854869151 transcription factor TF Family: C2H2 PREDICTED: protein SUPPRESSOR OF FRI 4 [Jatropha curcas]
8 Hb_000956_040 0.087949071 - - PREDICTED: probable E3 ubiquitin-protein ligase HIP1 [Jatropha curcas]
9 Hb_000034_110 0.0889097695 - - sentrin/sumo-specific protease, putative [Ricinus communis]
10 Hb_003428_090 0.0898104556 - - PREDICTED: DNA (cytosine-5)-methyltransferase DRM2 [Jatropha curcas]
11 Hb_000172_360 0.0904599559 - - PREDICTED: apoptotic chromatin condensation inducer in the nucleus [Jatropha curcas]
12 Hb_002387_040 0.092390737 - - protein transporter, putative [Ricinus communis]
13 Hb_000979_140 0.0928441645 - - kinase family protein [Populus trichocarpa]
14 Hb_000015_200 0.0936690001 - - PREDICTED: LOW QUALITY PROTEIN: heat shock cognate 70 kDa protein 2-like [Jatropha curcas]
15 Hb_003417_030 0.0942801961 - - PREDICTED: sister chromatid cohesion 1 protein 2 isoform X1 [Jatropha curcas]
16 Hb_000452_030 0.0942904892 - - Protein phosphatase 1 regulatory subunit, putative [Ricinus communis]
17 Hb_000404_030 0.0948576081 - - PREDICTED: protein NAP1 [Jatropha curcas]
18 Hb_008165_020 0.0965331583 - - PREDICTED: CCR4-NOT transcription complex subunit 10 isoform X1 [Jatropha curcas]
19 Hb_001507_050 0.0988022541 - - PREDICTED: cysteine desulfurase 1, chloroplastic isoform X1 [Jatropha curcas]
20 Hb_000418_050 0.0997601448 - - PREDICTED: uncharacterized protein LOC105636892 [Jatropha curcas]

Gene co-expression network

sample Hb_003725_010 Hb_003725_010 Hb_013358_060 Hb_013358_060 Hb_003725_010--Hb_013358_060 Hb_000270_700 Hb_000270_700 Hb_003725_010--Hb_000270_700 Hb_024714_070 Hb_024714_070 Hb_003725_010--Hb_024714_070 Hb_012799_150 Hb_012799_150 Hb_003725_010--Hb_012799_150 Hb_000015_090 Hb_000015_090 Hb_003725_010--Hb_000015_090 Hb_017914_010 Hb_017914_010 Hb_003725_010--Hb_017914_010 Hb_006794_020 Hb_006794_020 Hb_013358_060--Hb_006794_020 Hb_002078_470 Hb_002078_470 Hb_013358_060--Hb_002078_470 Hb_000331_100 Hb_000331_100 Hb_013358_060--Hb_000331_100 Hb_000428_030 Hb_000428_030 Hb_013358_060--Hb_000428_030 Hb_000035_100 Hb_000035_100 Hb_013358_060--Hb_000035_100 Hb_000034_110 Hb_000034_110 Hb_000270_700--Hb_000034_110 Hb_000418_050 Hb_000418_050 Hb_000270_700--Hb_000418_050 Hb_002686_410 Hb_002686_410 Hb_000270_700--Hb_002686_410 Hb_005885_030 Hb_005885_030 Hb_000270_700--Hb_005885_030 Hb_000421_110 Hb_000421_110 Hb_000270_700--Hb_000421_110 Hb_024714_070--Hb_017914_010 Hb_002387_040 Hb_002387_040 Hb_024714_070--Hb_002387_040 Hb_003417_030 Hb_003417_030 Hb_024714_070--Hb_003417_030 Hb_024714_070--Hb_000015_090 Hb_024714_070--Hb_013358_060 Hb_172979_010 Hb_172979_010 Hb_012799_150--Hb_172979_010 Hb_104920_010 Hb_104920_010 Hb_012799_150--Hb_104920_010 Hb_012799_150--Hb_003417_030 Hb_003687_120 Hb_003687_120 Hb_012799_150--Hb_003687_120 Hb_025787_010 Hb_025787_010 Hb_012799_150--Hb_025787_010 Hb_000452_030 Hb_000452_030 Hb_000015_090--Hb_000452_030 Hb_000664_090 Hb_000664_090 Hb_000015_090--Hb_000664_090 Hb_004375_110 Hb_004375_110 Hb_000015_090--Hb_004375_110 Hb_000015_200 Hb_000015_200 Hb_000015_090--Hb_000015_200 Hb_000979_140 Hb_000979_140 Hb_000015_090--Hb_000979_140 Hb_017914_010--Hb_003417_030 Hb_017914_010--Hb_013358_060 Hb_017914_010--Hb_000270_700 Hb_010775_010 Hb_010775_010 Hb_017914_010--Hb_010775_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.74449 31.2651 29.3331 16.8265 6.04257 6.63051
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.2218 9.15636 7.66486 19.1475 21.8952

CAGE analysis