Hb_003728_020

Information

Type -
Description -
Location Contig3728: 11074-22480
Sequence    

Annotation

kegg
ID rcu:RCOM_0452820
description hypothetical protein
nr
ID XP_002533362.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q67XL4
description Uncharacterized CRM domain-containing protein At3g25440, chloroplastic OS=Arabidopsis thaliana GN=At3g25440 PE=2 SV=1
trembl
ID B9T543
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0452820 PE=4 SV=1
Gene Ontology
ID GO:0003723
description uncharacterized crm domain-containing protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003728_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_005527_050 0.0540395113 - - PREDICTED: uncharacterized protein LOC105643024 [Jatropha curcas]
3 Hb_150069_020 0.0622031387 - - PREDICTED: ribosome biogenesis regulatory protein homolog isoform X1 [Jatropha curcas]
4 Hb_000032_570 0.0636427762 transcription factor TF Family: Coactivator p15 PREDICTED: RNA polymerase II transcriptional coactivator KELP [Jatropha curcas]
5 Hb_000012_090 0.0661760543 - - 3'-5' exonuclease, putative [Ricinus communis]
6 Hb_001811_150 0.0662274964 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 28-like isoform X2 [Jatropha curcas]
7 Hb_000322_050 0.0738161137 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 4-like [Jatropha curcas]
8 Hb_002272_250 0.074248168 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
9 Hb_028639_060 0.0753455494 - - transporter, putative [Ricinus communis]
10 Hb_001030_120 0.0768228302 - - PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
11 Hb_003453_020 0.07701332 - - PREDICTED: histidine biosynthesis bifunctional protein hisIE, chloroplastic [Jatropha curcas]
12 Hb_033491_010 0.077043268 - - Phosphatidylinositol N-acetylglucosaminyltransferase subunit C, putative [Ricinus communis]
13 Hb_002249_140 0.0787269389 - - PREDICTED: uncharacterized protein LOC105648715 [Jatropha curcas]
14 Hb_001214_130 0.0795957831 - - PREDICTED: uncharacterized protein LOC105646578 [Jatropha curcas]
15 Hb_000017_120 0.0810422934 - - PREDICTED: PIN2/TERF1-interacting telomerase inhibitor 1 [Jatropha curcas]
16 Hb_001221_230 0.0822934384 - - conserved hypothetical protein [Ricinus communis]
17 Hb_060809_010 0.0840425399 - - PREDICTED: uncharacterized protein LOC105163892 [Sesamum indicum]
18 Hb_055590_010 0.0860484862 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000272_100 0.0862082093 - - PREDICTED: uncharacterized protein LOC103949110 [Pyrus x bretschneideri]
20 Hb_004096_170 0.0870998405 - - PREDICTED: uncharacterized protein DDB_G0275933 [Jatropha curcas]

Gene co-expression network

sample Hb_003728_020 Hb_003728_020 Hb_005527_050 Hb_005527_050 Hb_003728_020--Hb_005527_050 Hb_150069_020 Hb_150069_020 Hb_003728_020--Hb_150069_020 Hb_000032_570 Hb_000032_570 Hb_003728_020--Hb_000032_570 Hb_000012_090 Hb_000012_090 Hb_003728_020--Hb_000012_090 Hb_001811_150 Hb_001811_150 Hb_003728_020--Hb_001811_150 Hb_000322_050 Hb_000322_050 Hb_003728_020--Hb_000322_050 Hb_003453_020 Hb_003453_020 Hb_005527_050--Hb_003453_020 Hb_002272_250 Hb_002272_250 Hb_005527_050--Hb_002272_250 Hb_005928_060 Hb_005928_060 Hb_005527_050--Hb_005928_060 Hb_000905_190 Hb_000905_190 Hb_005527_050--Hb_000905_190 Hb_005527_050--Hb_150069_020 Hb_150069_020--Hb_002272_250 Hb_076787_010 Hb_076787_010 Hb_150069_020--Hb_076787_010 Hb_150069_020--Hb_003453_020 Hb_002249_140 Hb_002249_140 Hb_150069_020--Hb_002249_140 Hb_003392_040 Hb_003392_040 Hb_000032_570--Hb_003392_040 Hb_001030_120 Hb_001030_120 Hb_000032_570--Hb_001030_120 Hb_028872_140 Hb_028872_140 Hb_000032_570--Hb_028872_140 Hb_000169_010 Hb_000169_010 Hb_000032_570--Hb_000169_010 Hb_006692_030 Hb_006692_030 Hb_000032_570--Hb_006692_030 Hb_028639_060 Hb_028639_060 Hb_000012_090--Hb_028639_060 Hb_006922_080 Hb_006922_080 Hb_000012_090--Hb_006922_080 Hb_000012_090--Hb_003453_020 Hb_002014_080 Hb_002014_080 Hb_000012_090--Hb_002014_080 Hb_003602_040 Hb_003602_040 Hb_000012_090--Hb_003602_040 Hb_003728_030 Hb_003728_030 Hb_001811_150--Hb_003728_030 Hb_002762_060 Hb_002762_060 Hb_001811_150--Hb_002762_060 Hb_033491_010 Hb_033491_010 Hb_001811_150--Hb_033491_010 Hb_015941_030 Hb_015941_030 Hb_001811_150--Hb_015941_030 Hb_004221_010 Hb_004221_010 Hb_001811_150--Hb_004221_010 Hb_000322_050--Hb_003453_020 Hb_000322_050--Hb_000012_090 Hb_000322_050--Hb_028639_060 Hb_001221_230 Hb_001221_230 Hb_000322_050--Hb_001221_230 Hb_000322_050--Hb_000032_570
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.4749 5.18359 2.95143 3.51299 20.6341 17.2669
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.5922 13.8406 11.634 7.19386 3.63171

CAGE analysis