Hb_003728_030

Information

Type -
Description -
Location Contig3728: 22544-26571
Sequence    

Annotation

kegg
ID rcu:RCOM_0452810
description o-sialoglycoprotein endopeptidase, putative (EC:3.4.24.57)
nr
ID XP_002533361.1
description o-sialoglycoprotein endopeptidase, putative [Ricinus communis]
swissprot
ID A7SXZ6
description Probable tRNA N6-adenosine threonylcarbamoyltransferase OS=Nematostella vectensis GN=osgep PE=3 SV=1
trembl
ID B9T542
description O-sialoglycoprotein endopeptidase, putative OS=Ricinus communis GN=RCOM_0452810 PE=4 SV=1
Gene Ontology
ID GO:0005829
description probable trna n6-adenosine threonylcarbamoyltransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38075: 22599-24918 , PASA_asmbl_38076: 23242-26542
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003728_030 0.0 - - o-sialoglycoprotein endopeptidase, putative [Ricinus communis]
2 Hb_002030_030 0.0515223328 - - PREDICTED: GLABRA2 expression modulator [Jatropha curcas]
3 Hb_000483_360 0.0598424718 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 26 [Jatropha curcas]
4 Hb_000556_020 0.0683141725 - - PREDICTED: terminal uridylyltransferase 7 [Jatropha curcas]
5 Hb_003994_240 0.0685527505 - - Mediator subunit 8 isoform 3 [Theobroma cacao]
6 Hb_000300_280 0.0688595566 - - PREDICTED: BTB/POZ and MATH domain-containing protein 4 isoform X1 [Jatropha curcas]
7 Hb_001811_150 0.0735248506 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 28-like isoform X2 [Jatropha curcas]
8 Hb_004934_090 0.0744058848 - - hypothetical protein JCGZ_08073 [Jatropha curcas]
9 Hb_000522_090 0.0756941808 - - PREDICTED: actin-related protein 9 isoform X1 [Nicotiana tomentosiformis]
10 Hb_028639_060 0.076024152 - - transporter, putative [Ricinus communis]
11 Hb_003602_040 0.0770046285 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
12 Hb_005539_030 0.0780728336 - - PREDICTED: ubiquitin-like-specific protease 1D isoform X2 [Jatropha curcas]
13 Hb_000703_080 0.0783225191 - - guanine nucleotide exchange factor P532, putative [Ricinus communis]
14 Hb_000803_300 0.0799575974 - - nuclear movement protein nudc, putative [Ricinus communis]
15 Hb_004204_020 0.0800435281 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105640780 [Jatropha curcas]
16 Hb_001936_020 0.0800894688 - - PREDICTED: phosphatidylinositol 3-kinase, root isoform isoform X1 [Jatropha curcas]
17 Hb_033642_010 0.080126218 - - PREDICTED: protection of telomeres protein 1a-like isoform X2 [Jatropha curcas]
18 Hb_026099_010 0.0827329896 - - PREDICTED: E3 ubiquitin-protein ligase RHF2A isoform X2 [Jatropha curcas]
19 Hb_000879_140 0.0828948185 - - PREDICTED: uncharacterized protein DDB_G0283697-like isoform X2 [Jatropha curcas]
20 Hb_000032_570 0.0848371724 transcription factor TF Family: Coactivator p15 PREDICTED: RNA polymerase II transcriptional coactivator KELP [Jatropha curcas]

Gene co-expression network

sample Hb_003728_030 Hb_003728_030 Hb_002030_030 Hb_002030_030 Hb_003728_030--Hb_002030_030 Hb_000483_360 Hb_000483_360 Hb_003728_030--Hb_000483_360 Hb_000556_020 Hb_000556_020 Hb_003728_030--Hb_000556_020 Hb_003994_240 Hb_003994_240 Hb_003728_030--Hb_003994_240 Hb_000300_280 Hb_000300_280 Hb_003728_030--Hb_000300_280 Hb_001811_150 Hb_001811_150 Hb_003728_030--Hb_001811_150 Hb_004724_200 Hb_004724_200 Hb_002030_030--Hb_004724_200 Hb_000134_090 Hb_000134_090 Hb_002030_030--Hb_000134_090 Hb_004934_090 Hb_004934_090 Hb_002030_030--Hb_004934_090 Hb_033642_010 Hb_033642_010 Hb_002030_030--Hb_033642_010 Hb_002079_010 Hb_002079_010 Hb_002030_030--Hb_002079_010 Hb_005539_030 Hb_005539_030 Hb_000483_360--Hb_005539_030 Hb_001936_020 Hb_001936_020 Hb_000483_360--Hb_001936_020 Hb_000483_360--Hb_000556_020 Hb_005215_030 Hb_005215_030 Hb_000483_360--Hb_005215_030 Hb_000483_360--Hb_000300_280 Hb_000556_020--Hb_001811_150 Hb_016657_010 Hb_016657_010 Hb_000556_020--Hb_016657_010 Hb_000879_140 Hb_000879_140 Hb_000556_020--Hb_000879_140 Hb_000522_090 Hb_000522_090 Hb_000556_020--Hb_000522_090 Hb_003994_240--Hb_001936_020 Hb_003994_240--Hb_004934_090 Hb_001663_030 Hb_001663_030 Hb_003994_240--Hb_001663_030 Hb_004108_140 Hb_004108_140 Hb_003994_240--Hb_004108_140 Hb_003994_240--Hb_002030_030 Hb_004310_060 Hb_004310_060 Hb_000300_280--Hb_004310_060 Hb_000300_280--Hb_000879_140 Hb_000370_030 Hb_000370_030 Hb_000300_280--Hb_000370_030 Hb_000184_130 Hb_000184_130 Hb_000300_280--Hb_000184_130 Hb_000373_270 Hb_000373_270 Hb_000300_280--Hb_000373_270 Hb_003728_020 Hb_003728_020 Hb_001811_150--Hb_003728_020 Hb_002762_060 Hb_002762_060 Hb_001811_150--Hb_002762_060 Hb_033491_010 Hb_033491_010 Hb_001811_150--Hb_033491_010 Hb_015941_030 Hb_015941_030 Hb_001811_150--Hb_015941_030 Hb_004221_010 Hb_004221_010 Hb_001811_150--Hb_004221_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
55.7903 31.0141 12.0097 13.1543 59.1238 73.2188
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
64.062 34.9609 41.9214 37.6816 15.5776

CAGE analysis