Hb_003728_060

Information

Type transcription factor
Description TF Family: FAR1
Location Contig3728: 44565-56444
Sequence    

Annotation

kegg
ID rcu:RCOM_0452690
description hypothetical protein
nr
ID XP_012065176.1
description PREDICTED: protein FAR1-RELATED SEQUENCE 4-like [Jatropha curcas]
swissprot
ID Q9SZL8
description Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana GN=FRS5 PE=2 SV=1
trembl
ID A0A067LI00
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20859 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38077: 44164-44709 , PASA_asmbl_38078: 44857-45113 , PASA_asmbl_38080: 55286-56457
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003728_060 0.0 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 4-like [Jatropha curcas]
2 Hb_004162_130 0.0687932098 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000375_350 0.0703922207 - - PREDICTED: uncharacterized protein LOC105641632 [Jatropha curcas]
4 Hb_002871_190 0.0721606243 - - PREDICTED: uncharacterized protein LOC105628867 [Jatropha curcas]
5 Hb_050514_010 0.072921167 - - hypothetical protein 29 [Hevea brasiliensis]
6 Hb_000260_030 0.0778405929 transcription factor TF Family: IWS1 transcription elongation factor s-II, putative [Ricinus communis]
7 Hb_026889_030 0.0781636305 - - protein with unknown function [Ricinus communis]
8 Hb_005167_010 0.081539453 - - PREDICTED: serine/threonine-protein kinase At5g01020 isoform X1 [Jatropha curcas]
9 Hb_002304_150 0.0823979734 - - PREDICTED: protein IQ-DOMAIN 1-like isoform X1 [Jatropha curcas]
10 Hb_000175_340 0.0849456462 - - PREDICTED: uncharacterized protein LOC105634861 isoform X3 [Jatropha curcas]
11 Hb_012799_170 0.0850102175 - - PREDICTED: protein GLC8 isoform X2 [Jatropha curcas]
12 Hb_003124_150 0.0852429496 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 28-like [Jatropha curcas]
13 Hb_001863_380 0.0859037425 - - PREDICTED: 14-3-3 protein 7 [Jatropha curcas]
14 Hb_017895_040 0.0862311739 - - hypothetical protein POPTR_0006s08120g [Populus trichocarpa]
15 Hb_000827_050 0.0863722656 - - PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
16 Hb_006132_090 0.0870535708 - - PREDICTED: origin of replication complex subunit 5 isoform X1 [Jatropha curcas]
17 Hb_004109_170 0.0878275809 - - PREDICTED: probable ribokinase [Jatropha curcas]
18 Hb_001300_150 0.0890201956 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 3 [Jatropha curcas]
19 Hb_012114_070 0.0891877332 - - PREDICTED: uncharacterized protein LOC105645812 [Jatropha curcas]
20 Hb_003077_020 0.0896891513 - - ABC transporter family protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_003728_060 Hb_003728_060 Hb_004162_130 Hb_004162_130 Hb_003728_060--Hb_004162_130 Hb_000375_350 Hb_000375_350 Hb_003728_060--Hb_000375_350 Hb_002871_190 Hb_002871_190 Hb_003728_060--Hb_002871_190 Hb_050514_010 Hb_050514_010 Hb_003728_060--Hb_050514_010 Hb_000260_030 Hb_000260_030 Hb_003728_060--Hb_000260_030 Hb_026889_030 Hb_026889_030 Hb_003728_060--Hb_026889_030 Hb_004162_130--Hb_000375_350 Hb_164010_040 Hb_164010_040 Hb_004162_130--Hb_164010_040 Hb_001300_150 Hb_001300_150 Hb_004162_130--Hb_001300_150 Hb_000733_200 Hb_000733_200 Hb_004162_130--Hb_000733_200 Hb_011519_010 Hb_011519_010 Hb_004162_130--Hb_011519_010 Hb_017895_040 Hb_017895_040 Hb_000375_350--Hb_017895_040 Hb_000375_350--Hb_001300_150 Hb_000599_250 Hb_000599_250 Hb_000375_350--Hb_000599_250 Hb_005496_140 Hb_005496_140 Hb_000375_350--Hb_005496_140 Hb_002641_060 Hb_002641_060 Hb_000375_350--Hb_002641_060 Hb_013575_010 Hb_013575_010 Hb_000375_350--Hb_013575_010 Hb_002871_190--Hb_026889_030 Hb_002871_190--Hb_050514_010 Hb_010361_010 Hb_010361_010 Hb_002871_190--Hb_010361_010 Hb_002600_090 Hb_002600_090 Hb_002871_190--Hb_002600_090 Hb_000827_050 Hb_000827_050 Hb_002871_190--Hb_000827_050 Hb_050514_010--Hb_000260_030 Hb_050514_010--Hb_000827_050 Hb_050514_010--Hb_001300_150 Hb_004109_170 Hb_004109_170 Hb_050514_010--Hb_004109_170 Hb_000465_160 Hb_000465_160 Hb_050514_010--Hb_000465_160 Hb_000260_030--Hb_004109_170 Hb_029879_130 Hb_029879_130 Hb_000260_030--Hb_029879_130 Hb_000260_030--Hb_000827_050 Hb_000260_030--Hb_001300_150 Hb_000614_160 Hb_000614_160 Hb_000260_030--Hb_000614_160 Hb_028872_080 Hb_028872_080 Hb_026889_030--Hb_028872_080 Hb_004889_020 Hb_004889_020 Hb_026889_030--Hb_004889_020 Hb_008071_020 Hb_008071_020 Hb_026889_030--Hb_008071_020 Hb_026889_030--Hb_010361_010 Hb_026889_030--Hb_000827_050 Hb_000676_390 Hb_000676_390 Hb_026889_030--Hb_000676_390
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.0559 5.46446 16.5365 11.2391 8.32507 7.25019
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.2304 15.6808 15.0314 5.66071 10.258

CAGE analysis