Hb_003728_080

Information

Type transcription factor
Description TF Family: FAR1
Location Contig3728: 68480-73170
Sequence    

Annotation

kegg
ID pmum:103336000
description protein FAR-RED ELONGATED HYPOCOTYL 3-like
nr
ID XP_012065173.1
description PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3-like [Jatropha curcas]
swissprot
ID Q9ZVC9
description Protein FAR1-RELATED SEQUENCE 3 OS=Arabidopsis thaliana GN=FRS3 PE=2 SV=2
trembl
ID A0A067L5V8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20856 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38081: 68498-73110
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003728_080 0.0 transcription factor TF Family: FAR1 PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3-like [Jatropha curcas]
2 Hb_004369_020 0.0556251282 - - PREDICTED: pentatricopeptide repeat-containing protein At1g63330-like [Jatropha curcas]
3 Hb_010139_040 0.0624758869 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
4 Hb_006064_010 0.0688752643 - - PREDICTED: DDB1- and CUL4-associated factor 4 [Jatropha curcas]
5 Hb_048937_040 0.0701626081 - - APO protein 4, mitochondrial precursor, putative [Ricinus communis]
6 Hb_009646_030 0.0732434885 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003665_060 0.0737070872 - - PREDICTED: protein N-lysine methyltransferase METTL21A [Jatropha curcas]
8 Hb_000010_330 0.0748694056 - - PREDICTED: probable Ufm1-specific protease [Jatropha curcas]
9 Hb_007075_040 0.0750764983 - - hypothetical protein CISIN_1g039518mg, partial [Citrus sinensis]
10 Hb_004841_010 0.0774500045 - - PREDICTED: 60S ribosomal protein L2, mitochondrial [Jatropha curcas]
11 Hb_000395_170 0.0786105424 - - PREDICTED: probable transcriptional regulatory protein At2g25830 [Jatropha curcas]
12 Hb_011139_030 0.0787888532 - - PREDICTED: E3 ubiquitin-protein ligase MBR2-like [Jatropha curcas]
13 Hb_004182_040 0.0788625188 - - PREDICTED: J domain-containing protein spf31 [Jatropha curcas]
14 Hb_010457_030 0.0801410967 - - APO protein 4, mitochondrial precursor, putative [Ricinus communis]
15 Hb_000230_560 0.0818579325 - - PREDICTED: UPF0613 protein PB24D3.06c [Jatropha curcas]
16 Hb_000170_210 0.0819952781 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
17 Hb_004221_020 0.0825484336 - - protein binding protein, putative [Ricinus communis]
18 Hb_000796_220 0.082720849 - - PREDICTED: uncharacterized protein LOC105642644 isoform X3 [Jatropha curcas]
19 Hb_000072_220 0.0836138443 - - PREDICTED: pentatricopeptide repeat-containing protein At3g02490, mitochondrial [Jatropha curcas]
20 Hb_000392_300 0.0842581415 - - PREDICTED: RINT1-like protein MAG2 [Jatropha curcas]

Gene co-expression network

sample Hb_003728_080 Hb_003728_080 Hb_004369_020 Hb_004369_020 Hb_003728_080--Hb_004369_020 Hb_010139_040 Hb_010139_040 Hb_003728_080--Hb_010139_040 Hb_006064_010 Hb_006064_010 Hb_003728_080--Hb_006064_010 Hb_048937_040 Hb_048937_040 Hb_003728_080--Hb_048937_040 Hb_009646_030 Hb_009646_030 Hb_003728_080--Hb_009646_030 Hb_003665_060 Hb_003665_060 Hb_003728_080--Hb_003665_060 Hb_001450_050 Hb_001450_050 Hb_004369_020--Hb_001450_050 Hb_000010_090 Hb_000010_090 Hb_004369_020--Hb_000010_090 Hb_000173_290 Hb_000173_290 Hb_004369_020--Hb_000173_290 Hb_004182_040 Hb_004182_040 Hb_004369_020--Hb_004182_040 Hb_000010_330 Hb_000010_330 Hb_004369_020--Hb_000010_330 Hb_004221_020 Hb_004221_020 Hb_010139_040--Hb_004221_020 Hb_000072_220 Hb_000072_220 Hb_010139_040--Hb_000072_220 Hb_010457_030 Hb_010457_030 Hb_010139_040--Hb_010457_030 Hb_010139_040--Hb_048937_040 Hb_002835_370 Hb_002835_370 Hb_010139_040--Hb_002835_370 Hb_000690_130 Hb_000690_130 Hb_006064_010--Hb_000690_130 Hb_000879_200 Hb_000879_200 Hb_006064_010--Hb_000879_200 Hb_011139_030 Hb_011139_030 Hb_006064_010--Hb_011139_030 Hb_007026_030 Hb_007026_030 Hb_006064_010--Hb_007026_030 Hb_006064_010--Hb_009646_030 Hb_048937_040--Hb_010457_030 Hb_003175_010 Hb_003175_010 Hb_048937_040--Hb_003175_010 Hb_004724_200 Hb_004724_200 Hb_048937_040--Hb_004724_200 Hb_048937_040--Hb_000010_330 Hb_001301_200 Hb_001301_200 Hb_048937_040--Hb_001301_200 Hb_006620_020 Hb_006620_020 Hb_009646_030--Hb_006620_020 Hb_004055_150 Hb_004055_150 Hb_009646_030--Hb_004055_150 Hb_001926_030 Hb_001926_030 Hb_009646_030--Hb_001926_030 Hb_009646_030--Hb_000879_200 Hb_002997_080 Hb_002997_080 Hb_009646_030--Hb_002997_080 Hb_002078_020 Hb_002078_020 Hb_009646_030--Hb_002078_020 Hb_003665_060--Hb_000010_330 Hb_003964_070 Hb_003964_070 Hb_003665_060--Hb_003964_070 Hb_007317_110 Hb_007317_110 Hb_003665_060--Hb_007317_110 Hb_000230_560 Hb_000230_560 Hb_003665_060--Hb_000230_560 Hb_003030_070 Hb_003030_070 Hb_003665_060--Hb_003030_070 Hb_000085_160 Hb_000085_160 Hb_003665_060--Hb_000085_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.9467 7.03613 13.0164 11.2946 20.4821 25.0567
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.8813 18.0589 20.2697 11.4064 13.6701

CAGE analysis