Hb_003729_030

Information

Type -
Description -
Location Contig3729: 49316-53619
Sequence    

Annotation

kegg
ID pop:POPTR_0010s11510g
description POPTRDRAFT_726767; hypothetical protein
nr
ID XP_012072334.1
description PREDICTED: alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 [Jatropha curcas]
swissprot
ID Q94AH8
description Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 OS=Arabidopsis thaliana GN=TPS6 PE=1 SV=2
trembl
ID A0A067L222
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04782 PE=4 SV=1
Gene Ontology
ID GO:0003825
description #NAME?

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38089: 49269-49517 , PASA_asmbl_38090: 49540-54094 , PASA_asmbl_38091: 54142-54463
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003729_030 0.0 - - PREDICTED: alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 [Jatropha curcas]
2 Hb_000321_150 0.0467456987 - - PREDICTED: uncharacterized protein LOC105645596 isoform X1 [Jatropha curcas]
3 Hb_000069_470 0.0627740707 - - PREDICTED: uncharacterized protein LOC105642863 isoform X1 [Jatropha curcas]
4 Hb_002253_080 0.0636535305 - - PREDICTED: phosphatidylinositol 4-kinase beta 1-like [Jatropha curcas]
5 Hb_000120_660 0.064709185 - - PREDICTED: epidermal growth factor receptor substrate 15-like 1 [Jatropha curcas]
6 Hb_000260_070 0.0648472197 - - kinase, putative [Ricinus communis]
7 Hb_011242_060 0.0651578704 transcription factor TF Family: SNF2 Chromo domain protein, putative [Ricinus communis]
8 Hb_000977_120 0.0668949653 - - PREDICTED: sister chromatid cohesion 1 protein 4 isoform X2 [Jatropha curcas]
9 Hb_001054_030 0.0676749891 transcription factor TF Family: NF-X1 PREDICTED: NF-X1-type zinc finger protein NFXL1 [Jatropha curcas]
10 Hb_001322_130 0.0680944531 - - PREDICTED: putative glycerol-3-phosphate transporter 4 [Jatropha curcas]
11 Hb_031042_050 0.0687191759 - - PREDICTED: protein transport protein SEC16B homolog [Jatropha curcas]
12 Hb_009615_170 0.0706539712 - - PREDICTED: sphingoid long-chain bases kinase 1 isoform X1 [Jatropha curcas]
13 Hb_000174_290 0.0718340874 - - PREDICTED: conserved oligomeric Golgi complex subunit 1 [Jatropha curcas]
14 Hb_002006_040 0.0719155809 - - PREDICTED: translation initiation factor eIF-2B subunit delta isoform X1 [Jatropha curcas]
15 Hb_000094_310 0.0750869802 - - PREDICTED: uncharacterized membrane protein At1g75140 [Jatropha curcas]
16 Hb_009767_080 0.0756857452 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105631983 [Jatropha curcas]
17 Hb_019430_020 0.0768852451 - - PREDICTED: uncharacterized protein LOC105641844 isoform X1 [Jatropha curcas]
18 Hb_005656_040 0.0774632954 desease resistance Gene Name: T2SE ATP-dependent RNA helicase, putative [Ricinus communis]
19 Hb_000260_640 0.0776171514 - - PREDICTED: uncharacterized protein At1g51745 [Jatropha curcas]
20 Hb_001967_030 0.0785544716 - - PREDICTED: uncharacterized protein LOC105633557 [Jatropha curcas]

Gene co-expression network

sample Hb_003729_030 Hb_003729_030 Hb_000321_150 Hb_000321_150 Hb_003729_030--Hb_000321_150 Hb_000069_470 Hb_000069_470 Hb_003729_030--Hb_000069_470 Hb_002253_080 Hb_002253_080 Hb_003729_030--Hb_002253_080 Hb_000120_660 Hb_000120_660 Hb_003729_030--Hb_000120_660 Hb_000260_070 Hb_000260_070 Hb_003729_030--Hb_000260_070 Hb_011242_060 Hb_011242_060 Hb_003729_030--Hb_011242_060 Hb_006117_080 Hb_006117_080 Hb_000321_150--Hb_006117_080 Hb_000321_150--Hb_000069_470 Hb_000661_130 Hb_000661_130 Hb_000321_150--Hb_000661_130 Hb_009767_080 Hb_009767_080 Hb_000321_150--Hb_009767_080 Hb_000977_120 Hb_000977_120 Hb_000321_150--Hb_000977_120 Hb_000069_470--Hb_011242_060 Hb_031042_050 Hb_031042_050 Hb_000069_470--Hb_031042_050 Hb_000069_470--Hb_006117_080 Hb_000025_280 Hb_000025_280 Hb_000069_470--Hb_000025_280 Hb_001104_190 Hb_001104_190 Hb_000069_470--Hb_001104_190 Hb_004483_040 Hb_004483_040 Hb_000069_470--Hb_004483_040 Hb_001322_130 Hb_001322_130 Hb_002253_080--Hb_001322_130 Hb_008253_030 Hb_008253_030 Hb_002253_080--Hb_008253_030 Hb_001767_140 Hb_001767_140 Hb_002253_080--Hb_001767_140 Hb_002253_080--Hb_031042_050 Hb_002267_140 Hb_002267_140 Hb_002253_080--Hb_002267_140 Hb_002615_090 Hb_002615_090 Hb_002253_080--Hb_002615_090 Hb_004629_010 Hb_004629_010 Hb_000120_660--Hb_004629_010 Hb_157966_010 Hb_157966_010 Hb_000120_660--Hb_157966_010 Hb_005104_010 Hb_005104_010 Hb_000120_660--Hb_005104_010 Hb_000780_170 Hb_000780_170 Hb_000120_660--Hb_000780_170 Hb_000120_660--Hb_008253_030 Hb_013358_010 Hb_013358_010 Hb_000260_070--Hb_013358_010 Hb_000260_070--Hb_000321_150 Hb_002780_010 Hb_002780_010 Hb_000260_070--Hb_002780_010 Hb_000174_290 Hb_000174_290 Hb_000260_070--Hb_000174_290 Hb_000094_310 Hb_000094_310 Hb_000260_070--Hb_000094_310 Hb_003581_170 Hb_003581_170 Hb_011242_060--Hb_003581_170 Hb_000265_090 Hb_000265_090 Hb_011242_060--Hb_000265_090 Hb_000836_020 Hb_000836_020 Hb_011242_060--Hb_000836_020 Hb_011242_060--Hb_000321_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.8889 26.8518 8.2337 11.8926 14.0408 15.8868
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.54182 6.44061 14.0268 12.0059 12.594

CAGE analysis