Hb_003729_050

Information

Type -
Description -
Location Contig3729: 66779-67778
Sequence    

Annotation

kegg
ID pop:POPTR_0010s11470g
description POPTRDRAFT_566421; hypothetical protein
nr
ID XP_012072347.1
description PREDICTED: vacuolar iron transporter 1-like isoform X1 [Jatropha curcas]
swissprot
ID Q9ZUA5
description Vacuolar iron transporter 1 OS=Arabidopsis thaliana GN=VIT1 PE=2 SV=1
trembl
ID A0A067KT57
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04791 PE=4 SV=1
Gene Ontology
ID GO:0005623
description vacuolar iron transporter 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003729_050 0.0 - - PREDICTED: vacuolar iron transporter 1-like isoform X1 [Jatropha curcas]
2 Hb_006355_100 0.0254280119 - - hypothetical protein glysoja_002455 [Glycine soja]
3 Hb_008032_010 0.02555035 - - Chain A, Anomalous Substructure Of Hydroxynitrile Lyase
4 Hb_132840_060 0.0306955555 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH57-like [Jatropha curcas]
5 Hb_002701_100 0.0488730616 transcription factor TF Family: MIKC PREDICTED: truncated transcription factor CAULIFLOWER A-like [Jatropha curcas]
6 Hb_155874_020 0.052587133 - - Chain A, Anomalous Substructure Of Hydroxynitrile Lyase
7 Hb_009189_090 0.0527382691 - - protein phosphatase-2c, putative [Ricinus communis]
8 Hb_000023_170 0.0596209657 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2-like [Jatropha curcas]
9 Hb_008195_100 0.0696562042 transcription factor TF Family: C2C2-YABBY PREDICTED: protein YABBY 4 [Vitis vinifera]
10 Hb_017358_060 0.0728173591 - - PREDICTED: uncharacterized protein LOC105641510 [Jatropha curcas]
11 Hb_003702_010 0.0731777985 - - PREDICTED: phospholipase A1-II 1-like [Jatropha curcas]
12 Hb_000853_340 0.0869389411 - - PREDICTED: kynurenine--oxoglutarate transaminase 1-like isoform X2 [Populus euphratica]
13 Hb_000016_140 0.0878502483 - - glucose-methanol-choline (gmc) oxidoreductase, putative [Ricinus communis]
14 Hb_005375_100 0.0882075807 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH57-like [Jatropha curcas]
15 Hb_001033_080 0.0910311982 transcription factor TF Family: C2H2 Transcriptional regulator SUPERMAN, putative [Ricinus communis]
16 Hb_000173_330 0.0950162213 - - PREDICTED: glutamine synthetase leaf isozyme, chloroplastic [Vitis vinifera]
17 Hb_000334_020 0.0957651736 - - PREDICTED: dynein light chain 2, cytoplasmic [Jatropha curcas]
18 Hb_005357_210 0.0963270051 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein MERISTEM L1 [Jatropha curcas]
19 Hb_001401_050 0.0999039253 - - PREDICTED: chlorophyll a-b binding protein P4, chloroplastic [Jatropha curcas]
20 Hb_063584_010 0.1064774089 - - hypothetical protein JCGZ_10530 [Jatropha curcas]

Gene co-expression network

sample Hb_003729_050 Hb_003729_050 Hb_006355_100 Hb_006355_100 Hb_003729_050--Hb_006355_100 Hb_008032_010 Hb_008032_010 Hb_003729_050--Hb_008032_010 Hb_132840_060 Hb_132840_060 Hb_003729_050--Hb_132840_060 Hb_002701_100 Hb_002701_100 Hb_003729_050--Hb_002701_100 Hb_155874_020 Hb_155874_020 Hb_003729_050--Hb_155874_020 Hb_009189_090 Hb_009189_090 Hb_003729_050--Hb_009189_090 Hb_006355_100--Hb_008032_010 Hb_006355_100--Hb_132840_060 Hb_006355_100--Hb_009189_090 Hb_006355_100--Hb_002701_100 Hb_000023_170 Hb_000023_170 Hb_006355_100--Hb_000023_170 Hb_008032_010--Hb_132840_060 Hb_008032_010--Hb_009189_090 Hb_008032_010--Hb_000023_170 Hb_008032_010--Hb_155874_020 Hb_132840_060--Hb_155874_020 Hb_132840_060--Hb_009189_090 Hb_132840_060--Hb_000023_170 Hb_002701_100--Hb_008032_010 Hb_000016_140 Hb_000016_140 Hb_002701_100--Hb_000016_140 Hb_002701_100--Hb_132840_060 Hb_000334_020 Hb_000334_020 Hb_002701_100--Hb_000334_020 Hb_000853_340 Hb_000853_340 Hb_155874_020--Hb_000853_340 Hb_003702_010 Hb_003702_010 Hb_155874_020--Hb_003702_010 Hb_155874_020--Hb_000023_170 Hb_008195_100 Hb_008195_100 Hb_155874_020--Hb_008195_100 Hb_009189_090--Hb_000023_170 Hb_009189_090--Hb_003702_010 Hb_005357_210 Hb_005357_210 Hb_009189_090--Hb_005357_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.833609 0.0283971 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.2354

CAGE analysis