Hb_003732_010

Information

Type -
Description -
Location Contig3732: 3619-9872
Sequence    

Annotation

kegg
ID cvr:CHLNCDRAFT_58243
description hypothetical protein
nr
ID XP_005846426.1
description hypothetical protein CHLNCDRAFT_58243 [Chlorella variabilis]
swissprot
ID Q8TWY8
description Probable phosphoglucosamine mutase OS=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=glmM PE=3 SV=1
trembl
ID E1ZIF7
description Putative uncharacterized protein OS=Chlorella variabilis GN=CHLNCDRAFT_58243 PE=3 SV=1
Gene Ontology
ID GO:0000287
description chloroplastic isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38159: 3532-28850 , PASA_asmbl_38160: 3532-24178
cDNA
(Sanger)
(ID:Location)		 013_M24.ab1: 3586-4408 , 044_J23.ab1: 3532-5740 , 047_O01.ab1: 3579-5696

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003732_010 0.0 - - hypothetical protein CHLNCDRAFT_58243 [Chlorella variabilis]
2 Hb_001833_110 0.0992645184 - - conserved hypothetical protein [Ricinus communis]
3 Hb_004965_070 0.1064351405 - - PREDICTED: UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase [Jatropha curcas]
4 Hb_001360_050 0.1142409036 - - PREDICTED: probable helicase MAGATAMA 3 isoform X1 [Jatropha curcas]
5 Hb_117134_010 0.1142468036 - - PREDICTED: 14 kDa zinc-binding protein isoform X1 [Jatropha curcas]
6 Hb_004724_340 0.1152126595 - - PREDICTED: mitochondrial fission protein ELM1 [Jatropha curcas]
7 Hb_000053_100 0.1163095889 - - PREDICTED: uncharacterized protein LOC105642071 [Jatropha curcas]
8 Hb_000340_260 0.1166809854 - - Auxin-binding protein T85 precursor, putative [Ricinus communis]
9 Hb_003687_150 0.1186976036 - - PREDICTED: putative E3 ubiquitin-protein ligase XBAT35 isoform X1 [Jatropha curcas]
10 Hb_002551_020 0.119792562 - - PREDICTED: phospholipase SGR2 isoform X1 [Jatropha curcas]
11 Hb_001832_010 0.1207830873 - - PREDICTED: uncharacterized protein LOC105637890 isoform X1 [Jatropha curcas]
12 Hb_005092_060 0.1229638128 - - snf1-kinase beta subunit, plants, putative [Ricinus communis]
13 Hb_116894_020 0.123785153 - - hypothetical protein POPTR_0008s07660g [Populus trichocarpa]
14 Hb_000061_320 0.1242556082 - - PREDICTED: uncharacterized protein LOC105640575 isoform X1 [Jatropha curcas]
15 Hb_001904_090 0.1244376671 - - PREDICTED: mitochondrial dicarboxylate/tricarboxylate transporter DTC [Jatropha curcas]
16 Hb_000010_470 0.1255928761 - - Galactose oxidase/kelch repeat superfamily protein isoform 2 [Theobroma cacao]
17 Hb_000496_060 0.1264821979 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH3 [Jatropha curcas]
18 Hb_000125_190 0.1269722294 - - PREDICTED: F-box protein SKIP16 isoform X2 [Jatropha curcas]
19 Hb_000123_170 0.1291487955 - - Rab3 [Hevea brasiliensis]
20 Hb_000046_290 0.1294513519 - - PREDICTED: tubby-like F-box protein 3 [Tarenaya hassleriana]

Gene co-expression network

sample Hb_003732_010 Hb_003732_010 Hb_001833_110 Hb_001833_110 Hb_003732_010--Hb_001833_110 Hb_004965_070 Hb_004965_070 Hb_003732_010--Hb_004965_070 Hb_001360_050 Hb_001360_050 Hb_003732_010--Hb_001360_050 Hb_117134_010 Hb_117134_010 Hb_003732_010--Hb_117134_010 Hb_004724_340 Hb_004724_340 Hb_003732_010--Hb_004724_340 Hb_000053_100 Hb_000053_100 Hb_003732_010--Hb_000053_100 Hb_002759_060 Hb_002759_060 Hb_001833_110--Hb_002759_060 Hb_001833_110--Hb_001360_050 Hb_015807_040 Hb_015807_040 Hb_001833_110--Hb_015807_040 Hb_001832_010 Hb_001832_010 Hb_001833_110--Hb_001832_010 Hb_001833_110--Hb_004724_340 Hb_000041_050 Hb_000041_050 Hb_001833_110--Hb_000041_050 Hb_000700_130 Hb_000700_130 Hb_004965_070--Hb_000700_130 Hb_000340_260 Hb_000340_260 Hb_004965_070--Hb_000340_260 Hb_004965_070--Hb_001832_010 Hb_004965_070--Hb_117134_010 Hb_004738_010 Hb_004738_010 Hb_004965_070--Hb_004738_010 Hb_001360_050--Hb_004724_340 Hb_002471_080 Hb_002471_080 Hb_001360_050--Hb_002471_080 Hb_005092_060 Hb_005092_060 Hb_001360_050--Hb_005092_060 Hb_001360_050--Hb_002759_060 Hb_012675_060 Hb_012675_060 Hb_001360_050--Hb_012675_060 Hb_005398_030 Hb_005398_030 Hb_117134_010--Hb_005398_030 Hb_000496_060 Hb_000496_060 Hb_117134_010--Hb_000496_060 Hb_000061_320 Hb_000061_320 Hb_117134_010--Hb_000061_320 Hb_117134_010--Hb_001833_110 Hb_005432_030 Hb_005432_030 Hb_117134_010--Hb_005432_030 Hb_071130_030 Hb_071130_030 Hb_117134_010--Hb_071130_030 Hb_010080_090 Hb_010080_090 Hb_004724_340--Hb_010080_090 Hb_004724_340--Hb_012675_060 Hb_000347_410 Hb_000347_410 Hb_004724_340--Hb_000347_410 Hb_004724_340--Hb_002471_080 Hb_007002_030 Hb_007002_030 Hb_000053_100--Hb_007002_030 Hb_000053_100--Hb_001833_110 Hb_012053_070 Hb_012053_070 Hb_000053_100--Hb_012053_070 Hb_002016_100 Hb_002016_100 Hb_000053_100--Hb_002016_100 Hb_024185_020 Hb_024185_020 Hb_000053_100--Hb_024185_020 Hb_001369_690 Hb_001369_690 Hb_000053_100--Hb_001369_690
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.3242 7.30273 10.9651 22.0687 28.4094 44.6591
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
101.614 41.3739 74.1969 35.5772 26.0591

CAGE analysis