Hb_003734_070

Information

Type -
Description -
Location Contig3734: 58686-60251
Sequence    

Annotation

kegg
ID rcu:RCOM_1254540
description chlorophyll A/B binding protein, putative
nr
ID XP_002525758.1
description chlorophyll A/B binding protein, putative [Ricinus communis]
swissprot
ID P27489
description Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1
trembl
ID B9SID9
description Chlorophyll A/B binding protein, putative OS=Ricinus communis GN=RCOM_1254540 PE=4 SV=1
Gene Ontology
ID GO:0009522
description chlorophyll a-b binding protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38172: 59740-59864
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003734_070 0.0 - - chlorophyll A/B binding protein, putative [Ricinus communis]
2 Hb_000077_020 0.0353043444 - - conserved hypothetical protein [Ricinus communis]
3 Hb_068580_010 0.0431927138 - - PREDICTED: probable receptor-like serine/threonine-protein kinase At5g57670 isoform X2 [Populus euphratica]
4 Hb_004880_020 0.0434375526 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1 [Jatropha curcas]
5 Hb_009588_010 0.0509305278 - - sigma factor sigb regulation protein rsbq, putative [Ricinus communis]
6 Hb_009233_020 0.0532871084 - - PREDICTED: 3-ketoacyl-CoA synthase 12 [Jatropha curcas]
7 Hb_009225_060 0.0584545711 - - PREDICTED: myosin heavy chain kinase B-like [Populus euphratica]
8 Hb_000418_130 0.0588368762 - - PREDICTED: photosystem I reaction center subunit psaK, chloroplastic [Jatropha curcas]
9 Hb_004837_010 0.0589489252 - - PREDICTED: aldehyde dehydrogenase family 3 member F1-like [Jatropha curcas]
10 Hb_002328_080 0.0606584699 - - short-chain dehydrogenase, putative [Ricinus communis]
11 Hb_001507_060 0.0626718688 - - translation initiation factor eif-2b gamma subunit, putative [Ricinus communis]
12 Hb_004032_400 0.0630011116 - - PREDICTED: uncharacterized transporter YBR287W-like [Jatropha curcas]
13 Hb_003913_120 0.0638230029 transcription factor TF Family: MYB hypothetical protein POPTR_0015s09430g [Populus trichocarpa]
14 Hb_003086_140 0.0681730377 transcription factor TF Family: C2C2-YABBY PREDICTED: protein YABBY 6-like isoform X2 [Jatropha curcas]
15 Hb_002028_020 0.0704636927 - - acyltransferase, putative [Ricinus communis]
16 Hb_004993_020 0.0715523203 - - PREDICTED: putative ribonuclease H protein At1g65750 [Beta vulgaris subsp. vulgaris]
17 Hb_085682_010 0.0718278313 - - -
18 Hb_000731_150 0.0727416004 - - PREDICTED: cytochrome P450 77A1 [Jatropha curcas]
19 Hb_001534_060 0.074147029 - - PREDICTED: UDP-glycosyltransferase 73C3 [Jatropha curcas]
20 Hb_000557_070 0.0748670191 - - S-locus-specific glycoprotein S13 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_003734_070 Hb_003734_070 Hb_000077_020 Hb_000077_020 Hb_003734_070--Hb_000077_020 Hb_068580_010 Hb_068580_010 Hb_003734_070--Hb_068580_010 Hb_004880_020 Hb_004880_020 Hb_003734_070--Hb_004880_020 Hb_009588_010 Hb_009588_010 Hb_003734_070--Hb_009588_010 Hb_009233_020 Hb_009233_020 Hb_003734_070--Hb_009233_020 Hb_009225_060 Hb_009225_060 Hb_003734_070--Hb_009225_060 Hb_000077_020--Hb_004880_020 Hb_000077_020--Hb_009233_020 Hb_000077_020--Hb_009225_060 Hb_000077_020--Hb_068580_010 Hb_001507_060 Hb_001507_060 Hb_000077_020--Hb_001507_060 Hb_004993_020 Hb_004993_020 Hb_068580_010--Hb_004993_020 Hb_000557_070 Hb_000557_070 Hb_068580_010--Hb_000557_070 Hb_000731_150 Hb_000731_150 Hb_068580_010--Hb_000731_150 Hb_068580_010--Hb_004880_020 Hb_004880_020--Hb_009225_060 Hb_004880_020--Hb_009233_020 Hb_001426_020 Hb_001426_020 Hb_004880_020--Hb_001426_020 Hb_002028_020 Hb_002028_020 Hb_009588_010--Hb_002028_020 Hb_000418_130 Hb_000418_130 Hb_009588_010--Hb_000418_130 Hb_001488_230 Hb_001488_230 Hb_009588_010--Hb_001488_230 Hb_004032_400 Hb_004032_400 Hb_009588_010--Hb_004032_400 Hb_000042_280 Hb_000042_280 Hb_009588_010--Hb_000042_280 Hb_009233_020--Hb_009225_060 Hb_085682_010 Hb_085682_010 Hb_009233_020--Hb_085682_010 Hb_000329_120 Hb_000329_120 Hb_009233_020--Hb_000329_120 Hb_009225_060--Hb_085682_010 Hb_006588_140 Hb_006588_140 Hb_009225_060--Hb_006588_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.48234 308.993 244.746 0 0.0998052
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.15453 0.20256 0 0.896334 446.536

CAGE analysis