Hb_003734_080

Information

Type -
Description -
Location Contig3734: 61708-79944
Sequence    

Annotation

kegg
ID rcu:RCOM_1254430
description myosin vIII, putative
nr
ID XP_002525757.1
description myosin vIII, putative [Ricinus communis]
swissprot
ID F4K0A6
description Myosin-2 OS=Arabidopsis thaliana GN=VIII-2 PE=2 SV=1
trembl
ID B9SID8
description Myosin vIII, putative OS=Ricinus communis GN=RCOM_1254430 PE=4 SV=1
Gene Ontology
ID GO:0016459
description myosin-2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003734_080 0.0 - - myosin vIII, putative [Ricinus communis]
2 Hb_002249_030 0.109532801 - - PREDICTED: chaperone protein ClpC, chloroplastic [Jatropha curcas]
3 Hb_007192_090 0.1115579775 - - PREDICTED: elongation factor Tu, chloroplastic-like [Glycine max]
4 Hb_002942_130 0.1119673522 - - PREDICTED: chaperone protein ClpC, chloroplastic [Jatropha curcas]
5 Hb_004254_100 0.1158563649 - - PREDICTED: synaptotagmin-4 isoform X1 [Jatropha curcas]
6 Hb_000264_230 0.1170861656 - - PREDICTED: uncharacterized protein LOC105649528 [Jatropha curcas]
7 Hb_000170_160 0.117110646 - - PREDICTED: NAD kinase 2, chloroplastic [Jatropha curcas]
8 Hb_000529_130 0.117327579 - - hypothetical protein POPTR_0007s14320g [Populus trichocarpa]
9 Hb_011616_040 0.1173999454 - - glucan water dikinase 3, partial [Manihot esculenta]
10 Hb_001277_340 0.1181963599 - - aldo/keto reductase, putative [Ricinus communis]
11 Hb_000771_170 0.1188215682 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 11, chloroplastic/mitochondrial [Jatropha curcas]
12 Hb_007576_070 0.1237122597 - - PREDICTED: uncharacterized protein LOC105640040 isoform X3 [Jatropha curcas]
13 Hb_000997_100 0.1238867741 - - PREDICTED: uncharacterized protein LOC105632094 isoform X2 [Jatropha curcas]
14 Hb_001828_120 0.1249078855 - - PREDICTED: uncharacterized protein LOC105140167 [Populus euphratica]
15 Hb_003929_220 0.1273201599 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
16 Hb_000008_280 0.1278442548 - - PREDICTED: double-stranded RNA-binding protein 2 [Jatropha curcas]
17 Hb_000031_230 0.1286045722 - - PREDICTED: probable cyclic nucleotide-gated ion channel 14 isoform X1 [Jatropha curcas]
18 Hb_002447_050 0.1292641432 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
19 Hb_000562_070 0.1294183244 - - PREDICTED: uncharacterized protein LOC105635371 isoform X1 [Jatropha curcas]
20 Hb_004994_350 0.1295774075 - - PREDICTED: UPF0187 protein At3g61320, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_003734_080 Hb_003734_080 Hb_002249_030 Hb_002249_030 Hb_003734_080--Hb_002249_030 Hb_007192_090 Hb_007192_090 Hb_003734_080--Hb_007192_090 Hb_002942_130 Hb_002942_130 Hb_003734_080--Hb_002942_130 Hb_004254_100 Hb_004254_100 Hb_003734_080--Hb_004254_100 Hb_000264_230 Hb_000264_230 Hb_003734_080--Hb_000264_230 Hb_000170_160 Hb_000170_160 Hb_003734_080--Hb_000170_160 Hb_000404_030 Hb_000404_030 Hb_002249_030--Hb_000404_030 Hb_011616_040 Hb_011616_040 Hb_002249_030--Hb_011616_040 Hb_001178_030 Hb_001178_030 Hb_002249_030--Hb_001178_030 Hb_000008_280 Hb_000008_280 Hb_002249_030--Hb_000008_280 Hb_002600_070 Hb_002600_070 Hb_002249_030--Hb_002600_070 Hb_000771_170 Hb_000771_170 Hb_002249_030--Hb_000771_170 Hb_001472_160 Hb_001472_160 Hb_007192_090--Hb_001472_160 Hb_001828_120 Hb_001828_120 Hb_007192_090--Hb_001828_120 Hb_007769_040 Hb_007769_040 Hb_007192_090--Hb_007769_040 Hb_002973_110 Hb_002973_110 Hb_007192_090--Hb_002973_110 Hb_025477_050 Hb_025477_050 Hb_007192_090--Hb_025477_050 Hb_000589_110 Hb_000589_110 Hb_007192_090--Hb_000589_110 Hb_002942_130--Hb_004254_100 Hb_001437_120 Hb_001437_120 Hb_002942_130--Hb_001437_120 Hb_000320_360 Hb_000320_360 Hb_002942_130--Hb_000320_360 Hb_002942_130--Hb_007192_090 Hb_002942_130--Hb_011616_040 Hb_003900_030 Hb_003900_030 Hb_004254_100--Hb_003900_030 Hb_004254_100--Hb_000771_170 Hb_001040_070 Hb_001040_070 Hb_004254_100--Hb_001040_070 Hb_001408_030 Hb_001408_030 Hb_004254_100--Hb_001408_030 Hb_005883_020 Hb_005883_020 Hb_004254_100--Hb_005883_020 Hb_000334_170 Hb_000334_170 Hb_000264_230--Hb_000334_170 Hb_000264_230--Hb_003900_030 Hb_000260_560 Hb_000260_560 Hb_000264_230--Hb_000260_560 Hb_000264_230--Hb_007192_090 Hb_000264_230--Hb_004254_100 Hb_013405_180 Hb_013405_180 Hb_000170_160--Hb_013405_180 Hb_003750_130 Hb_003750_130 Hb_000170_160--Hb_003750_130 Hb_000170_160--Hb_000008_280 Hb_001998_210 Hb_001998_210 Hb_000170_160--Hb_001998_210 Hb_021079_020 Hb_021079_020 Hb_000170_160--Hb_021079_020 Hb_000673_010 Hb_000673_010 Hb_000170_160--Hb_000673_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.52648 15.5604 13.9467 6.7793 6.89767 5.86177
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.93989 1.90455 2.0494 3.59642 20.8098

CAGE analysis