Hb_003734_130

Information

Type -
Description -
Location Contig3734: 121879-130406
Sequence    

Annotation

kegg
ID rcu:RCOM_0517460
description Stromal membrane-associated protein, putative
nr
ID XP_012070651.1
description PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD5 [Jatropha curcas]
swissprot
ID Q9FL69
description Probable ADP-ribosylation factor GTPase-activating protein AGD5 OS=Arabidopsis thaliana GN=AGD5 PE=1 SV=1
trembl
ID A0A067KRU5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00698 PE=4 SV=1
Gene Ontology
ID GO:0012505
description probable adp-ribosylation factor gtpase-activating protein agd5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38178: 122010-130337 , PASA_asmbl_38179: 122615-123100
cDNA
(Sanger)
(ID:Location)		 036_K12.ab1: 126133-130311

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003734_130 0.0 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD5 [Jatropha curcas]
2 Hb_002675_190 0.0733861212 - - ABC transporter family protein [Hevea brasiliensis]
3 Hb_003777_220 0.0735413118 transcription factor TF Family: SET PREDICTED: protein SET DOMAIN GROUP 41 isoform X1 [Jatropha curcas]
4 Hb_011316_030 0.083531913 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 7 isoform X1 [Jatropha curcas]
5 Hb_160818_010 0.0869410471 - - -
6 Hb_000573_040 0.093173757 - - hypothetical protein JCGZ_19524 [Jatropha curcas]
7 Hb_001439_180 0.0960634298 - - hypothetical protein POPTR_0004s13090g [Populus trichocarpa]
8 Hb_000684_180 0.0965496451 - - PREDICTED: importin subunit alpha-9 isoform X1 [Jatropha curcas]
9 Hb_000320_440 0.098960713 - - PREDICTED: tRNA wybutosine-synthesizing protein 2/3/4 isoform X1 [Jatropha curcas]
10 Hb_002169_010 0.0992635832 - - PREDICTED: la-related protein 6B [Jatropha curcas]
11 Hb_001431_070 0.1000609371 - - PREDICTED: large proline-rich protein bag6-like isoform X2 [Jatropha curcas]
12 Hb_000176_140 0.1005174643 - - PREDICTED: bystin [Jatropha curcas]
13 Hb_000491_080 0.1031116904 - - PREDICTED: F-box protein SKIP31 [Jatropha curcas]
14 Hb_002377_050 0.1049022974 - - Agmatine deiminase, putative [Ricinus communis]
15 Hb_001140_080 0.1051728301 - - PREDICTED: membrane steroid-binding protein 2-like [Jatropha curcas]
16 Hb_000212_280 0.1053546212 - - PREDICTED: putative RNA-binding protein Luc7-like 2 [Gossypium raimondii]
17 Hb_004931_040 0.1070959007 - - splicing factor-related family protein [Populus trichocarpa]
18 Hb_001776_080 0.1071066776 - - PREDICTED: CAX-interacting protein 4 [Jatropha curcas]
19 Hb_012807_120 0.1076405377 - - metal ion binding protein, putative [Ricinus communis]
20 Hb_011496_010 0.107717914 - - PREDICTED: pentatricopeptide repeat-containing protein At2g38420, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_003734_130 Hb_003734_130 Hb_002675_190 Hb_002675_190 Hb_003734_130--Hb_002675_190 Hb_003777_220 Hb_003777_220 Hb_003734_130--Hb_003777_220 Hb_011316_030 Hb_011316_030 Hb_003734_130--Hb_011316_030 Hb_160818_010 Hb_160818_010 Hb_003734_130--Hb_160818_010 Hb_000573_040 Hb_000573_040 Hb_003734_130--Hb_000573_040 Hb_001439_180 Hb_001439_180 Hb_003734_130--Hb_001439_180 Hb_000331_480 Hb_000331_480 Hb_002675_190--Hb_000331_480 Hb_004931_040 Hb_004931_040 Hb_002675_190--Hb_004931_040 Hb_002675_190--Hb_001439_180 Hb_001034_020 Hb_001034_020 Hb_002675_190--Hb_001034_020 Hb_000212_280 Hb_000212_280 Hb_002675_190--Hb_000212_280 Hb_003777_220--Hb_011316_030 Hb_000320_440 Hb_000320_440 Hb_003777_220--Hb_000320_440 Hb_000176_140 Hb_000176_140 Hb_003777_220--Hb_000176_140 Hb_000684_180 Hb_000684_180 Hb_003777_220--Hb_000684_180 Hb_012807_120 Hb_012807_120 Hb_003777_220--Hb_012807_120 Hb_011316_030--Hb_000176_140 Hb_000491_080 Hb_000491_080 Hb_011316_030--Hb_000491_080 Hb_000179_250 Hb_000179_250 Hb_011316_030--Hb_000179_250 Hb_001776_080 Hb_001776_080 Hb_011316_030--Hb_001776_080 Hb_127979_010 Hb_127979_010 Hb_011316_030--Hb_127979_010 Hb_160818_010--Hb_000491_080 Hb_002169_010 Hb_002169_010 Hb_160818_010--Hb_002169_010 Hb_160818_010--Hb_001776_080 Hb_160818_010--Hb_000320_440 Hb_011496_010 Hb_011496_010 Hb_160818_010--Hb_011496_010 Hb_005314_010 Hb_005314_010 Hb_160818_010--Hb_005314_010 Hb_002025_140 Hb_002025_140 Hb_000573_040--Hb_002025_140 Hb_000573_040--Hb_000684_180 Hb_000134_360 Hb_000134_360 Hb_000573_040--Hb_000134_360 Hb_000573_040--Hb_000212_280 Hb_005028_010 Hb_005028_010 Hb_000573_040--Hb_005028_010 Hb_004531_090 Hb_004531_090 Hb_000573_040--Hb_004531_090 Hb_000076_290 Hb_000076_290 Hb_001439_180--Hb_000076_290 Hb_001439_180--Hb_001034_020 Hb_029281_010 Hb_029281_010 Hb_001439_180--Hb_029281_010 Hb_001439_180--Hb_000331_480 Hb_001439_180--Hb_004931_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
337.271 73.972 18.1693 22.446 332.401 404.688
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
207.037 51.8985 162.541 87.1224 12.8835

CAGE analysis