Hb_003734_140

Information

Type -
Description -
Location Contig3734: 130591-132414
Sequence    

Annotation

kegg
ID rcu:RCOM_0517450
description hypothetical protein
nr
ID XP_002531043.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SYH4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0517450 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003734_140 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_089839_020 0.0566039117 - - hypothetical protein POPTR_0017s14180g [Populus trichocarpa]
3 Hb_002925_030 0.0718033971 - - 40S ribosomal protein S16B [Hevea brasiliensis]
4 Hb_002713_070 0.0768235838 - - hypothetical protein POPTR_0002s21620g [Populus trichocarpa]
5 Hb_000227_230 0.0778914022 - - PREDICTED: putative methyltransferase C9orf114 [Jatropha curcas]
6 Hb_001505_020 0.0802184225 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 9 [Jatropha curcas]
7 Hb_004375_100 0.0812065844 - - PREDICTED: 60S ribosomal protein L19-1 [Jatropha curcas]
8 Hb_156947_010 0.0834463742 - - kinase-like protein pac.x.7.4, partial [Platanus x acerifolia]
9 Hb_143766_050 0.0841606996 - - PREDICTED: 40S ribosomal protein S15a-5-like [Populus euphratica]
10 Hb_005511_160 0.0849575842 - - OB-fold nucleic acid binding domain-containing protein [Theobroma cacao]
11 Hb_000580_080 0.085430738 - - hypothetical protein CICLE_v10006145mg [Citrus clementina]
12 Hb_002375_090 0.0869208485 - - -
13 Hb_002259_070 0.088093904 - - taz protein, putative [Ricinus communis]
14 Hb_003203_040 0.0896240975 - - PREDICTED: transcription initiation factor TFIID subunit 7 [Vitis vinifera]
15 Hb_002660_030 0.0900716666 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000136_170 0.0904394861 - - PREDICTED: uncharacterized protein LOC105645501 [Jatropha curcas]
17 Hb_002701_240 0.0909201547 - - PREDICTED: putative DNA helicase INO80 [Jatropha curcas]
18 Hb_005618_140 0.0921535435 - - PREDICTED: uncharacterized protein LOC105642706 [Jatropha curcas]
19 Hb_012753_160 0.0928132388 - - ara4-interacting protein, putative [Ricinus communis]
20 Hb_000526_040 0.0932164194 - - 60S ribosomal protein L6, putative [Ricinus communis]

Gene co-expression network

sample Hb_003734_140 Hb_003734_140 Hb_089839_020 Hb_089839_020 Hb_003734_140--Hb_089839_020 Hb_002925_030 Hb_002925_030 Hb_003734_140--Hb_002925_030 Hb_002713_070 Hb_002713_070 Hb_003734_140--Hb_002713_070 Hb_000227_230 Hb_000227_230 Hb_003734_140--Hb_000227_230 Hb_001505_020 Hb_001505_020 Hb_003734_140--Hb_001505_020 Hb_004375_100 Hb_004375_100 Hb_003734_140--Hb_004375_100 Hb_089839_020--Hb_002713_070 Hb_089839_020--Hb_000227_230 Hb_000580_080 Hb_000580_080 Hb_089839_020--Hb_000580_080 Hb_089839_020--Hb_002925_030 Hb_000136_170 Hb_000136_170 Hb_089839_020--Hb_000136_170 Hb_003398_120 Hb_003398_120 Hb_002925_030--Hb_003398_120 Hb_001998_050 Hb_001998_050 Hb_002925_030--Hb_001998_050 Hb_002925_030--Hb_000227_230 Hb_001863_090 Hb_001863_090 Hb_002925_030--Hb_001863_090 Hb_002925_030--Hb_002713_070 Hb_011311_010 Hb_011311_010 Hb_002925_030--Hb_011311_010 Hb_002713_070--Hb_000136_170 Hb_002660_030 Hb_002660_030 Hb_002713_070--Hb_002660_030 Hb_002713_070--Hb_004375_100 Hb_002713_070--Hb_001505_020 Hb_000227_230--Hb_001998_050 Hb_000227_230--Hb_003398_120 Hb_000227_230--Hb_001505_020 Hb_000380_190 Hb_000380_190 Hb_000227_230--Hb_000380_190 Hb_006816_530 Hb_006816_530 Hb_001505_020--Hb_006816_530 Hb_001505_020--Hb_000136_170 Hb_001433_050 Hb_001433_050 Hb_001505_020--Hb_001433_050 Hb_001814_050 Hb_001814_050 Hb_001505_020--Hb_001814_050 Hb_010068_020 Hb_010068_020 Hb_004375_100--Hb_010068_020 Hb_002701_240 Hb_002701_240 Hb_004375_100--Hb_002701_240 Hb_004375_100--Hb_001814_050 Hb_156947_010 Hb_156947_010 Hb_004375_100--Hb_156947_010 Hb_004375_100--Hb_001505_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.836 8.62474 14.0471 12.2922 33.0548 40.0014
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
43.2014 101.571 42.017 28.9178 14.7375

CAGE analysis