Hb_003739_030

Information

Type -
Description -
Location Contig3739: 40751-75762
Sequence    

Annotation

kegg
ID vvi:100244993
description putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
nr
ID XP_012074662.1
description PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [Jatropha curcas]
swissprot
ID O60231
description Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS=Homo sapiens GN=DHX16 PE=1 SV=2
trembl
ID A0A067KVB9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10415 PE=4 SV=1
Gene Ontology
ID GO:0003676
description pre-mrna-splicing factor atp-dependent rna helicase dhx16

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38181: 40510-75698 , PASA_asmbl_38182: 40510-40785 , PASA_asmbl_38183: 50446-52881
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003739_030 0.0 - - PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [Jatropha curcas]
2 Hb_000261_030 0.0695334895 - - PREDICTED: uncharacterized protein LOC105633147 [Jatropha curcas]
3 Hb_000010_360 0.0698919266 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY [Jatropha curcas]
4 Hb_009771_110 0.0705961074 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 2 [Jatropha curcas]
5 Hb_001452_220 0.0733446084 - - PREDICTED: molybdopterin biosynthesis protein CNX1 [Jatropha curcas]
6 Hb_002784_010 0.0751424591 - - DNA-directed RNA polymerase I subunit, putative [Ricinus communis]
7 Hb_148909_030 0.0768829896 - - PREDICTED: uncharacterized protein LOC105638192 isoform X1 [Jatropha curcas]
8 Hb_006618_090 0.0798629456 - - PREDICTED: FAM10 family protein At4g22670 [Jatropha curcas]
9 Hb_000740_100 0.0799761118 - - calpain, putative [Ricinus communis]
10 Hb_002571_030 0.0813875647 - - PREDICTED: microfibrillar-associated protein 1-like [Prunus mume]
11 Hb_002422_050 0.08278984 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 5 isoform X1 [Jatropha curcas]
12 Hb_002631_140 0.0832242147 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 12, chloroplastic [Jatropha curcas]
13 Hb_005053_010 0.0846943519 - - PREDICTED: protease Do-like 9 [Jatropha curcas]
14 Hb_160459_040 0.0846987224 - - hypothetical protein JCGZ_01511 [Jatropha curcas]
15 Hb_001504_040 0.0865503586 - - PREDICTED: factor of DNA methylation 1-like [Jatropha curcas]
16 Hb_000577_030 0.0874780301 - - Ubiquitin carboxyl-terminal hydrolase 12 -like protein [Gossypium arboreum]
17 Hb_032920_130 0.0878059743 - - PREDICTED: vacuolar-sorting receptor 3 [Jatropha curcas]
18 Hb_023344_010 0.0885212441 - - PREDICTED: pre-mRNA-processing factor 39 isoform X2 [Jatropha curcas]
19 Hb_028487_010 0.0888290298 - - PREDICTED: mediator of RNA polymerase II transcription subunit 23 isoform X2 [Jatropha curcas]
20 Hb_005725_170 0.0890022021 - - PREDICTED: pre-mRNA-processing protein 40A isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_003739_030 Hb_003739_030 Hb_000261_030 Hb_000261_030 Hb_003739_030--Hb_000261_030 Hb_000010_360 Hb_000010_360 Hb_003739_030--Hb_000010_360 Hb_009771_110 Hb_009771_110 Hb_003739_030--Hb_009771_110 Hb_001452_220 Hb_001452_220 Hb_003739_030--Hb_001452_220 Hb_002784_010 Hb_002784_010 Hb_003739_030--Hb_002784_010 Hb_148909_030 Hb_148909_030 Hb_003739_030--Hb_148909_030 Hb_000740_100 Hb_000740_100 Hb_000261_030--Hb_000740_100 Hb_000035_410 Hb_000035_410 Hb_000261_030--Hb_000035_410 Hb_001235_230 Hb_001235_230 Hb_000261_030--Hb_001235_230 Hb_003124_160 Hb_003124_160 Hb_000261_030--Hb_003124_160 Hb_004453_110 Hb_004453_110 Hb_000261_030--Hb_004453_110 Hb_002329_040 Hb_002329_040 Hb_000261_030--Hb_002329_040 Hb_000406_230 Hb_000406_230 Hb_000010_360--Hb_000406_230 Hb_000191_130 Hb_000191_130 Hb_000010_360--Hb_000191_130 Hb_028487_010 Hb_028487_010 Hb_000010_360--Hb_028487_010 Hb_023344_010 Hb_023344_010 Hb_000010_360--Hb_023344_010 Hb_000640_310 Hb_000640_310 Hb_000010_360--Hb_000640_310 Hb_104061_020 Hb_104061_020 Hb_000010_360--Hb_104061_020 Hb_006618_090 Hb_006618_090 Hb_009771_110--Hb_006618_090 Hb_005053_010 Hb_005053_010 Hb_009771_110--Hb_005053_010 Hb_160459_040 Hb_160459_040 Hb_009771_110--Hb_160459_040 Hb_007929_080 Hb_007929_080 Hb_009771_110--Hb_007929_080 Hb_002571_030 Hb_002571_030 Hb_009771_110--Hb_002571_030 Hb_000523_080 Hb_000523_080 Hb_009771_110--Hb_000523_080 Hb_002391_370 Hb_002391_370 Hb_001452_220--Hb_002391_370 Hb_003913_110 Hb_003913_110 Hb_001452_220--Hb_003913_110 Hb_001452_220--Hb_028487_010 Hb_002909_090 Hb_002909_090 Hb_001452_220--Hb_002909_090 Hb_011173_030 Hb_011173_030 Hb_001452_220--Hb_011173_030 Hb_005214_150 Hb_005214_150 Hb_002784_010--Hb_005214_150 Hb_000025_710 Hb_000025_710 Hb_002784_010--Hb_000025_710 Hb_000786_040 Hb_000786_040 Hb_002784_010--Hb_000786_040 Hb_002784_010--Hb_000010_360 Hb_001191_120 Hb_001191_120 Hb_002784_010--Hb_001191_120 Hb_002784_010--Hb_000261_030 Hb_005488_150 Hb_005488_150 Hb_148909_030--Hb_005488_150 Hb_116929_010 Hb_116929_010 Hb_148909_030--Hb_116929_010 Hb_111985_080 Hb_111985_080 Hb_148909_030--Hb_111985_080 Hb_133047_010 Hb_133047_010 Hb_148909_030--Hb_133047_010 Hb_002392_030 Hb_002392_030 Hb_148909_030--Hb_002392_030 Hb_148909_030--Hb_000010_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.0479 11.9449 9.17066 5.44509 14.3811 14.084
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.54842 3.08601 4.0254 12.4137 10.2853

CAGE analysis