Hb_003739_040

Information

Type -
Description -
Location Contig3739: 56503-60015
Sequence    

Annotation

kegg
ID csv:101209704
description uncharacterized LOC101209704
nr
ID ABN06064.1
description RNA-directed DNA polymerase (Reverse transcriptase); Chromo; Zinc finger, CCHC-type; Peptidase aspartic, active site; Polynucleotidyl transferase, Ribonuclease H fold [Medicago truncatula]
swissprot
ID P92523
description Uncharacterized mitochondrial protein AtMg00860 OS=Arabidopsis thaliana GN=AtMg00860 PE=4 SV=1
trembl
ID A2Q2C7
description RNA-directed DNA polymerase (Reverse transcriptase); Chromo; Zinc finger, CCHC-type; Peptidase aspartic, active site; Polynucleotidyl transferase, Ribonuclease H fold OS=Medicago truncatula GN=MtrDRAFT_AC150244g37v2 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003739_040 0.0 - - RNA-directed DNA polymerase (Reverse transcriptase); Chromo; Zinc finger, CCHC-type; Peptidase aspartic, active site; Polynucleotidyl transferase, Ribonuclease H fold [Medicago truncatula]
2 Hb_180367_010 0.081760046 - - PREDICTED: uncharacterized protein LOC105794100 [Gossypium raimondii]
3 Hb_003567_020 0.0869353825 - - conserved hypothetical protein [Ricinus communis]
4 Hb_006599_040 0.1348077515 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
5 Hb_004145_030 0.1348078189 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
6 Hb_174010_030 0.1348082067 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
7 Hb_000777_010 0.1348082068 - - PREDICTED: uncharacterized protein LOC105766834 [Gossypium raimondii]
8 Hb_000905_010 0.1348091845 - - PREDICTED: cytochrome P450 705A5-like [Jatropha curcas]
9 Hb_002396_010 0.1348095096 - - PREDICTED: uncharacterized protein LOC105767002 [Gossypium raimondii]
10 Hb_001348_240 0.1348104174 - - Putative polyprotein, identical [Solanum demissum]
11 Hb_001782_090 0.1348121386 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62910-like [Vitis vinifera]
12 Hb_026317_020 0.1348338302 - - hypothetical protein VITISV_035911 [Vitis vinifera]
13 Hb_001307_230 0.1348636234 - - PREDICTED: interferon-related developmental regulator 1-like [Jatropha curcas]
14 Hb_000051_100 0.1349042037 - - hypothetical protein MIMGU_mgv1a025286mg [Erythranthe guttata]
15 Hb_001172_110 0.1349284592 - - hypothetical protein JCGZ_11284 [Jatropha curcas]
16 Hb_002375_100 0.1349683629 - - PREDICTED: uncharacterized protein LOC104878944 [Vitis vinifera]
17 Hb_000723_150 0.1351122075 - - PREDICTED: high affinity nitrate transporter 2.4-like [Jatropha curcas]
18 Hb_110426_010 0.1351566945 - - -
19 Hb_133913_010 0.1356489952 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
20 Hb_000288_050 0.1356828573 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003739_040 Hb_003739_040 Hb_180367_010 Hb_180367_010 Hb_003739_040--Hb_180367_010 Hb_003567_020 Hb_003567_020 Hb_003739_040--Hb_003567_020 Hb_006599_040 Hb_006599_040 Hb_003739_040--Hb_006599_040 Hb_004145_030 Hb_004145_030 Hb_003739_040--Hb_004145_030 Hb_174010_030 Hb_174010_030 Hb_003739_040--Hb_174010_030 Hb_000777_010 Hb_000777_010 Hb_003739_040--Hb_000777_010 Hb_180367_010--Hb_003567_020 Hb_017415_010 Hb_017415_010 Hb_180367_010--Hb_017415_010 Hb_003157_020 Hb_003157_020 Hb_180367_010--Hb_003157_020 Hb_002149_030 Hb_002149_030 Hb_180367_010--Hb_002149_030 Hb_164415_010 Hb_164415_010 Hb_180367_010--Hb_164415_010 Hb_003567_020--Hb_017415_010 Hb_121041_010 Hb_121041_010 Hb_003567_020--Hb_121041_010 Hb_003567_020--Hb_002149_030 Hb_158203_010 Hb_158203_010 Hb_003567_020--Hb_158203_010 Hb_006599_040--Hb_004145_030 Hb_006599_040--Hb_174010_030 Hb_006599_040--Hb_000777_010 Hb_002396_010 Hb_002396_010 Hb_006599_040--Hb_002396_010 Hb_001348_240 Hb_001348_240 Hb_006599_040--Hb_001348_240 Hb_000905_010 Hb_000905_010 Hb_006599_040--Hb_000905_010 Hb_004145_030--Hb_174010_030 Hb_004145_030--Hb_002396_010 Hb_004145_030--Hb_000777_010 Hb_004145_030--Hb_001348_240 Hb_004145_030--Hb_000905_010 Hb_174010_030--Hb_002396_010 Hb_174010_030--Hb_001348_240 Hb_174010_030--Hb_000777_010 Hb_174010_030--Hb_000905_010 Hb_000777_010--Hb_000905_010 Hb_001782_090 Hb_001782_090 Hb_000777_010--Hb_001782_090 Hb_000777_010--Hb_002396_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00851236 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0194864 0.209289

CAGE analysis