Hb_003740_020

Information

Type -
Description -
Location Contig3740: 35869-39829
Sequence    

Annotation

kegg
ID rcu:RCOM_0191380
description Methylglutaconyl-CoA hydratase, mitochondrial precursor, putative (EC:4.2.1.18)
nr
ID XP_012070065.1
description PREDICTED: methylglutaconyl-CoA hydratase, mitochondrial isoform X2 [Jatropha curcas]
swissprot
ID Q54HG7
description Methylglutaconyl-CoA hydratase, mitochondrial OS=Dictyostelium discoideum GN=auh PE=3 SV=1
trembl
ID A0A067L5Z9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03456 PE=3 SV=1
Gene Ontology
ID GO:0004490
description methylglutaconyl- mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38188: 36014-39829
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003740_020 0.0 - - PREDICTED: methylglutaconyl-CoA hydratase, mitochondrial isoform X2 [Jatropha curcas]
2 Hb_005357_110 0.0809811748 - - hypothetical protein B456_002G083000 [Gossypium raimondii]
3 Hb_029253_010 0.0889091407 - - PREDICTED: KH domain-containing protein SPIN1-like [Jatropha curcas]
4 Hb_021409_070 0.0894892503 - - PREDICTED: transcription factor bHLH157 isoform X1 [Jatropha curcas]
5 Hb_005511_130 0.0985481429 - - PREDICTED: transmembrane protein 115-like [Populus euphratica]
6 Hb_004730_020 0.1006233479 - - PREDICTED: uncharacterized protein LOC105641815 [Jatropha curcas]
7 Hb_000032_410 0.1072896227 - - PREDICTED: dynamin-related protein 5A [Jatropha curcas]
8 Hb_004218_130 0.1075380471 - - PREDICTED: uridine 5'-monophosphate synthase [Jatropha curcas]
9 Hb_003894_030 0.1081807139 - - plant sec1, putative [Ricinus communis]
10 Hb_004545_080 0.1086794981 - - protein with unknown function [Ricinus communis]
11 Hb_013405_070 0.1113650103 - - ferric-chelate reductase, putative [Ricinus communis]
12 Hb_000689_050 0.1123909887 - - conserved hypothetical protein [Ricinus communis]
13 Hb_006120_060 0.1155276545 - - O-acetyltransferase family protein isoform 1 [Theobroma cacao]
14 Hb_000940_210 0.1158385456 - - cyclophilin [Hevea brasiliensis]
15 Hb_008725_270 0.1159348347 - - PREDICTED: probable protein disulfide-isomerase A6 [Jatropha curcas]
16 Hb_000003_030 0.1163283763 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_002942_230 0.1182337011 - - PREDICTED: long chain base biosynthesis protein 2a [Populus euphratica]
18 Hb_002498_240 0.1187622627 - - PREDICTED: glucan endo-1,3-beta-glucosidase 1 isoform X1 [Jatropha curcas]
19 Hb_003687_080 0.1189830301 - - PREDICTED: casein kinase I-like [Jatropha curcas]
20 Hb_000098_180 0.1192922688 - - PREDICTED: uncharacterized protein LOC105633342 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_003740_020 Hb_003740_020 Hb_005357_110 Hb_005357_110 Hb_003740_020--Hb_005357_110 Hb_029253_010 Hb_029253_010 Hb_003740_020--Hb_029253_010 Hb_021409_070 Hb_021409_070 Hb_003740_020--Hb_021409_070 Hb_005511_130 Hb_005511_130 Hb_003740_020--Hb_005511_130 Hb_004730_020 Hb_004730_020 Hb_003740_020--Hb_004730_020 Hb_000032_410 Hb_000032_410 Hb_003740_020--Hb_000032_410 Hb_005357_110--Hb_000032_410 Hb_005357_110--Hb_029253_010 Hb_000915_130 Hb_000915_130 Hb_005357_110--Hb_000915_130 Hb_005357_110--Hb_004730_020 Hb_005357_110--Hb_005511_130 Hb_029253_010--Hb_000032_410 Hb_006925_050 Hb_006925_050 Hb_029253_010--Hb_006925_050 Hb_091318_010 Hb_091318_010 Hb_029253_010--Hb_091318_010 Hb_002374_270 Hb_002374_270 Hb_029253_010--Hb_002374_270 Hb_000566_010 Hb_000566_010 Hb_021409_070--Hb_000566_010 Hb_003680_220 Hb_003680_220 Hb_021409_070--Hb_003680_220 Hb_000007_090 Hb_000007_090 Hb_021409_070--Hb_000007_090 Hb_005665_090 Hb_005665_090 Hb_021409_070--Hb_005665_090 Hb_000414_080 Hb_000414_080 Hb_021409_070--Hb_000414_080 Hb_005511_130--Hb_004730_020 Hb_003687_080 Hb_003687_080 Hb_005511_130--Hb_003687_080 Hb_005511_130--Hb_000032_410 Hb_000984_220 Hb_000984_220 Hb_005511_130--Hb_000984_220 Hb_005511_130--Hb_000915_130 Hb_001579_300 Hb_001579_300 Hb_004730_020--Hb_001579_300 Hb_004730_020--Hb_000032_410 Hb_000527_080 Hb_000527_080 Hb_004730_020--Hb_000527_080 Hb_000032_410--Hb_000915_130 Hb_004545_080 Hb_004545_080 Hb_000032_410--Hb_004545_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.44642 5.10061 16.9025 16.4251 1.59065 2.37352
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.4127 3.05946 1.37678 6.0606 8.84046

CAGE analysis