Hb_003746_010

Information

Type -
Description -
Location Contig3746: 15463-21701
Sequence    

Annotation

kegg
ID rcu:RCOM_0373880
description hypothetical protein
nr
ID XP_002532077.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T1F9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0373880 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38192: 15868-21665 , PASA_asmbl_38193: 15868-21733
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003746_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001029_040 0.0731207745 - - PREDICTED: uncharacterized protein LOC105641058 [Jatropha curcas]
3 Hb_009674_050 0.076858664 - - Endosomal P24A protein precursor, putative [Ricinus communis]
4 Hb_005192_010 0.0836497841 - - PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]
5 Hb_001882_020 0.089598715 - - PREDICTED: uncharacterized protein LOC105628417 [Jatropha curcas]
6 Hb_003682_070 0.0981823913 - - PREDICTED: uncharacterized protein LOC105633817 isoform X1 [Jatropha curcas]
7 Hb_009252_030 0.0984546283 - - PREDICTED: CASP-like protein 4A3 [Jatropha curcas]
8 Hb_002400_060 0.0998159992 - - PREDICTED: putative clathrin assembly protein At2g25430 [Jatropha curcas]
9 Hb_000684_390 0.1022726514 - - PREDICTED: mediator of RNA polymerase II transcription subunit 4 [Jatropha curcas]
10 Hb_005348_110 0.1037230214 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
11 Hb_000665_190 0.1052364378 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000000_310 0.1061622764 - - metalloendopeptidase, putative [Ricinus communis]
13 Hb_000390_050 0.106679128 - - PREDICTED: GPCR-type G protein 1 [Jatropha curcas]
14 Hb_001754_020 0.1072294204 - - PREDICTED: kinesin-13A isoform X1 [Jatropha curcas]
15 Hb_000120_860 0.1089006663 - - nucellin, putative [Ricinus communis]
16 Hb_000417_390 0.1101104468 - - PREDICTED: ER lumen protein-retaining receptor A [Jatropha curcas]
17 Hb_000920_310 0.1110504067 - - Ran GTPase binding protein, putative [Ricinus communis]
18 Hb_003994_300 0.1123882307 - - conserved hypothetical protein [Ricinus communis]
19 Hb_022250_010 0.1128845505 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX10L [Jatropha curcas]
20 Hb_001946_180 0.1131223764 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003746_010 Hb_003746_010 Hb_001029_040 Hb_001029_040 Hb_003746_010--Hb_001029_040 Hb_009674_050 Hb_009674_050 Hb_003746_010--Hb_009674_050 Hb_005192_010 Hb_005192_010 Hb_003746_010--Hb_005192_010 Hb_001882_020 Hb_001882_020 Hb_003746_010--Hb_001882_020 Hb_003682_070 Hb_003682_070 Hb_003746_010--Hb_003682_070 Hb_009252_030 Hb_009252_030 Hb_003746_010--Hb_009252_030 Hb_001627_040 Hb_001627_040 Hb_001029_040--Hb_001627_040 Hb_007545_010 Hb_007545_010 Hb_001029_040--Hb_007545_010 Hb_001157_230 Hb_001157_230 Hb_001029_040--Hb_001157_230 Hb_138585_080 Hb_138585_080 Hb_001029_040--Hb_138585_080 Hb_022250_010 Hb_022250_010 Hb_001029_040--Hb_022250_010 Hb_002400_060 Hb_002400_060 Hb_009674_050--Hb_002400_060 Hb_005348_110 Hb_005348_110 Hb_009674_050--Hb_005348_110 Hb_009252_010 Hb_009252_010 Hb_009674_050--Hb_009252_010 Hb_030959_010 Hb_030959_010 Hb_009674_050--Hb_030959_010 Hb_005116_140 Hb_005116_140 Hb_009674_050--Hb_005116_140 Hb_003975_010 Hb_003975_010 Hb_005192_010--Hb_003975_010 Hb_005192_010--Hb_001029_040 Hb_000300_510 Hb_000300_510 Hb_005192_010--Hb_000300_510 Hb_000922_060 Hb_000922_060 Hb_005192_010--Hb_000922_060 Hb_001754_020 Hb_001754_020 Hb_005192_010--Hb_001754_020 Hb_001882_020--Hb_003682_070 Hb_027445_030 Hb_027445_030 Hb_001882_020--Hb_027445_030 Hb_001882_020--Hb_005192_010 Hb_001882_020--Hb_000922_060 Hb_001882_020--Hb_001029_040 Hb_000000_310 Hb_000000_310 Hb_003682_070--Hb_000000_310 Hb_003682_070--Hb_000922_060 Hb_003682_070--Hb_000300_510 Hb_000107_250 Hb_000107_250 Hb_003682_070--Hb_000107_250 Hb_000120_860 Hb_000120_860 Hb_003682_070--Hb_000120_860 Hb_004735_020 Hb_004735_020 Hb_003682_070--Hb_004735_020 Hb_009252_030--Hb_001029_040 Hb_009252_030--Hb_001754_020 Hb_005977_100 Hb_005977_100 Hb_009252_030--Hb_005977_100 Hb_000265_140 Hb_000265_140 Hb_009252_030--Hb_000265_140 Hb_001946_180 Hb_001946_180 Hb_009252_030--Hb_001946_180 Hb_000058_110 Hb_000058_110 Hb_009252_030--Hb_000058_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.12126 10.1089 10.0013 30.4519 8.01289 6.9073
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.13017 4.98619 9.32361 7.41716 27.5839

CAGE analysis