Hb_003746_020

Information

Type -
Description -
Location Contig3746: 23995-29466
Sequence    

Annotation

kegg
ID gmx:100787735
description magnesium-chelatase subunit ChlH, chloroplastic-like
nr
ID XP_012485538.1
description PREDICTED: magnesium-chelatase subunit ChlH, chloroplastic [Gossypium raimondii]
swissprot
ID B8ANF1
description Magnesium-chelatase subunit ChlH, chloroplastic OS=Oryza sativa subsp. indica GN=CHLH PE=3 SV=1
trembl
ID A0A0D2Q9R8
description Gossypium raimondii chromosome 6, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_006G136500 PE=4 SV=1
Gene Ontology
ID GO:0031969
description magnesium-chelatase subunit chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003746_020 0.0 - - PREDICTED: magnesium-chelatase subunit ChlH, chloroplastic [Gossypium raimondii]
2 Hb_088080_030 0.1329064102 - - ribosomal protein S4 [Hevea brasiliensis]
3 Hb_000920_020 0.1349794832 - - OSJNBa0004L19.22 [Oryza sativa Japonica Group]
4 Hb_000710_160 0.1508635048 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
5 Hb_189099_020 0.1733606095 - - NADH dehydrogenase subunit 9 (mitochondrion) [Hevea brasiliensis]
6 Hb_062192_060 0.178927329 - - maturase (mitochondrion) [Hevea brasiliensis]
7 Hb_154430_010 0.1900730778 - - PREDICTED: uncharacterized protein LOC105637632 isoform X2 [Jatropha curcas]
8 Hb_000614_270 0.1906138947 - - -
9 Hb_034168_010 0.1932088621 - - hypothetical protein [Azospirillum sp. CAG:260]
10 Hb_000135_080 0.1957354692 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
11 Hb_007533_050 0.1973552707 - - -
12 Hb_003336_020 0.1990088168 - - PREDICTED: probable sodium/metabolite cotransporter BASS3, chloroplastic [Vitis vinifera]
13 Hb_002200_100 0.2002252805 - - PREDICTED: pathogen-related protein-like [Jatropha curcas]
14 Hb_042463_070 0.2005091846 - - 60S ribosomal protein L16, putative [Ricinus communis]
15 Hb_012940_020 0.2035421851 - - zeaxanthin epoxidase, putative [Ricinus communis]
16 Hb_041813_030 0.2038980881 - - cytochrome oxidase subunit 1, partial (mitochondrion) [Calochone redingii]
17 Hb_002482_050 0.2042263979 transcription factor TF Family: NAC F-box family protein [Populus trichocarpa]
18 Hb_062192_030 0.205979844 - - ribosomal protein S1 (mitochondrion) [Hevea brasiliensis]
19 Hb_000699_080 0.2066554798 - - PREDICTED: rubisco accumulation factor 1, chloroplastic [Jatropha curcas]
20 Hb_079526_010 0.2070289146 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG8 [Populus euphratica]

Gene co-expression network

sample Hb_003746_020 Hb_003746_020 Hb_088080_030 Hb_088080_030 Hb_003746_020--Hb_088080_030 Hb_000920_020 Hb_000920_020 Hb_003746_020--Hb_000920_020 Hb_000710_160 Hb_000710_160 Hb_003746_020--Hb_000710_160 Hb_189099_020 Hb_189099_020 Hb_003746_020--Hb_189099_020 Hb_062192_060 Hb_062192_060 Hb_003746_020--Hb_062192_060 Hb_154430_010 Hb_154430_010 Hb_003746_020--Hb_154430_010 Hb_088080_030--Hb_189099_020 Hb_088080_030--Hb_000920_020 Hb_062192_030 Hb_062192_030 Hb_088080_030--Hb_062192_030 Hb_072212_020 Hb_072212_020 Hb_088080_030--Hb_072212_020 Hb_041813_030 Hb_041813_030 Hb_088080_030--Hb_041813_030 Hb_034168_010 Hb_034168_010 Hb_000920_020--Hb_034168_010 Hb_042463_070 Hb_042463_070 Hb_000920_020--Hb_042463_070 Hb_000920_020--Hb_189099_020 Hb_000920_020--Hb_041813_030 Hb_019253_040 Hb_019253_040 Hb_000920_020--Hb_019253_040 Hb_000710_160--Hb_062192_060 Hb_000710_160--Hb_088080_030 Hb_002686_060 Hb_002686_060 Hb_000710_160--Hb_002686_060 Hb_000699_080 Hb_000699_080 Hb_000710_160--Hb_000699_080 Hb_000710_160--Hb_000920_020 Hb_189099_020--Hb_062192_030 Hb_189099_020--Hb_034168_010 Hb_189099_020--Hb_041813_030 Hb_001338_080 Hb_001338_080 Hb_189099_020--Hb_001338_080 Hb_002482_050 Hb_002482_050 Hb_062192_060--Hb_002482_050 Hb_041813_050 Hb_041813_050 Hb_062192_060--Hb_041813_050 Hb_005154_090 Hb_005154_090 Hb_062192_060--Hb_005154_090 Hb_003362_020 Hb_003362_020 Hb_062192_060--Hb_003362_020 Hb_171685_030 Hb_171685_030 Hb_062192_060--Hb_171685_030 Hb_006970_010 Hb_006970_010 Hb_154430_010--Hb_006970_010 Hb_002200_100 Hb_002200_100 Hb_154430_010--Hb_002200_100 Hb_154430_010--Hb_000710_160 Hb_009316_050 Hb_009316_050 Hb_154430_010--Hb_009316_050 Hb_079526_010 Hb_079526_010 Hb_154430_010--Hb_079526_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00590444 0.0252666 0.0664466 0.0551338 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0421323 0.0605205 0.11275 1.26019

CAGE analysis