Hb_003746_040

Information

Type -
Description -
Location Contig3746: 46859-50295
Sequence    

Annotation

kegg
ID rcu:RCOM_0749490
description expressed protein, putative
nr
ID XP_012086154.1
description PREDICTED: protein N-terminal glutamine amidohydrolase [Jatropha curcas]
swissprot
ID O22944
description Protein N-terminal glutamine amidohydrolase OS=Arabidopsis thaliana GN=At2g41760 PE=1 SV=1
trembl
ID A0A067K1B7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21083 PE=4 SV=1
Gene Ontology
ID GO:0016811
description protein n-terminal glutamine amidohydrolase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38199: 46725-48016 , PASA_asmbl_38200: 48032-50263
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003746_040 0.0 - - PREDICTED: protein N-terminal glutamine amidohydrolase [Jatropha curcas]
2 Hb_001047_100 0.0578200948 - - 40S ribosomal protein S18, putative [Ricinus communis]
3 Hb_011828_050 0.0741877756 - - 40S ribosomal protein S23, putative [Ricinus communis]
4 Hb_043302_010 0.0767277157 - - ADP,ATP carrier protein, putative [Ricinus communis]
5 Hb_010128_130 0.0794560904 - - PREDICTED: G patch domain-containing protein 8 isoform X1 [Jatropha curcas]
6 Hb_105386_010 0.0797188571 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
7 Hb_000290_020 0.0832206357 - - PREDICTED: eukaryotic translation initiation factor 3 subunit K-like isoform X2 [Populus euphratica]
8 Hb_009767_120 0.0833242321 - - PREDICTED: probable prefoldin subunit 2 [Jatropha curcas]
9 Hb_000457_110 0.0833343709 - - Mitochondrial ribosomal protein L37 isoform 1 [Theobroma cacao]
10 Hb_000690_080 0.0836963134 transcription factor TF Family: HB -
11 Hb_000349_060 0.0847119183 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
12 Hb_001741_140 0.086067503 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
13 Hb_004944_010 0.0894811774 - - small nuclear ribonucleoprotein E [Hevea brasiliensis]
14 Hb_000742_140 0.0918284215 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000107_050 0.0924029781 - - 60S ribosomal protein L9, putative [Ricinus communis]
16 Hb_000933_180 0.0931679351 - - PREDICTED: chorismate mutase 3, chloroplastic [Jatropha curcas]
17 Hb_000084_290 0.0932555109 - - mitochondrial 39S ribosomal protein L53 [Hevea brasiliensis]
18 Hb_002235_150 0.0943164165 - - -
19 Hb_004204_200 0.095350497 - - PREDICTED: LYR motif-containing protein 4 [Jatropha curcas]
20 Hb_012193_010 0.0961393146 - - nucleic acid binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_003746_040 Hb_003746_040 Hb_001047_100 Hb_001047_100 Hb_003746_040--Hb_001047_100 Hb_011828_050 Hb_011828_050 Hb_003746_040--Hb_011828_050 Hb_043302_010 Hb_043302_010 Hb_003746_040--Hb_043302_010 Hb_010128_130 Hb_010128_130 Hb_003746_040--Hb_010128_130 Hb_105386_010 Hb_105386_010 Hb_003746_040--Hb_105386_010 Hb_000290_020 Hb_000290_020 Hb_003746_040--Hb_000290_020 Hb_001047_100--Hb_105386_010 Hb_000189_340 Hb_000189_340 Hb_001047_100--Hb_000189_340 Hb_001047_100--Hb_000290_020 Hb_001358_030 Hb_001358_030 Hb_001047_100--Hb_001358_030 Hb_001766_150 Hb_001766_150 Hb_001047_100--Hb_001766_150 Hb_011828_050--Hb_043302_010 Hb_009767_120 Hb_009767_120 Hb_011828_050--Hb_009767_120 Hb_004944_010 Hb_004944_010 Hb_011828_050--Hb_004944_010 Hb_000742_140 Hb_000742_140 Hb_011828_050--Hb_000742_140 Hb_003874_020 Hb_003874_020 Hb_011828_050--Hb_003874_020 Hb_043302_010--Hb_009767_120 Hb_000690_080 Hb_000690_080 Hb_043302_010--Hb_000690_080 Hb_004204_200 Hb_004204_200 Hb_043302_010--Hb_004204_200 Hb_043302_010--Hb_004944_010 Hb_001741_140 Hb_001741_140 Hb_010128_130--Hb_001741_140 Hb_000107_050 Hb_000107_050 Hb_010128_130--Hb_000107_050 Hb_000933_180 Hb_000933_180 Hb_010128_130--Hb_000933_180 Hb_001221_230 Hb_001221_230 Hb_010128_130--Hb_001221_230 Hb_010128_130--Hb_009767_120 Hb_012675_090 Hb_012675_090 Hb_010128_130--Hb_012675_090 Hb_105386_010--Hb_001358_030 Hb_105386_010--Hb_000189_340 Hb_000349_060 Hb_000349_060 Hb_105386_010--Hb_000349_060 Hb_023001_050 Hb_023001_050 Hb_105386_010--Hb_023001_050 Hb_031939_010 Hb_031939_010 Hb_000290_020--Hb_031939_010 Hb_011848_010 Hb_011848_010 Hb_000290_020--Hb_011848_010 Hb_008887_050 Hb_008887_050 Hb_000290_020--Hb_008887_050 Hb_143629_010 Hb_143629_010 Hb_000290_020--Hb_143629_010 Hb_000617_220 Hb_000617_220 Hb_000290_020--Hb_000617_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
35.2376 10.0099 12.1046 16.6929 42.1568 40.6364
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.074 39.7885 13.0495 10.7263 6.30245

CAGE analysis