Hb_003746_060

Information

Type -
Description -
Location Contig3746: 50466-51194
Sequence    

Annotation

kegg
ID rcu:RCOM_0749500
description hypothetical protein
nr
ID XP_012086155.1
description PREDICTED: DTW domain-containing protein 2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K2L9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21082 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003746_060 0.0 - - PREDICTED: DTW domain-containing protein 2 [Jatropha curcas]
2 Hb_000617_320 0.1275957583 - - 40S ribosomal protein S21B [Hevea brasiliensis]
3 Hb_000094_020 0.1297738073 - - Mitochondrial 50S ribosomal protein L27 [Hevea brasiliensis]
4 Hb_000193_350 0.1355921307 - - eukaryotic translation initiation factor 5A isoform VI [Hevea brasiliensis]
5 Hb_029888_020 0.1376223068 - - hypothetical protein PHAVU_007G268100g [Phaseolus vulgaris]
6 Hb_011257_010 0.1388157544 - - -
7 Hb_000995_050 0.1404790996 - - 40S ribosomal protein S17C [Hevea brasiliensis]
8 Hb_001269_320 0.141269758 - - 40S ribosomal protein S12A [Hevea brasiliensis]
9 Hb_096490_020 0.1420543519 - - PREDICTED: UPF0565 protein C2orf69 [Jatropha curcas]
10 Hb_004297_100 0.1440658791 - - PREDICTED: 60S acidic ribosomal protein P2B-like [Populus euphratica]
11 Hb_000175_400 0.1447093466 - - conserved hypothetical protein [Ricinus communis]
12 Hb_073367_010 0.1451602907 - - PREDICTED: origin of replication complex subunit 2 [Jatropha curcas]
13 Hb_120221_010 0.145400086 - - -
14 Hb_000510_090 0.1460363501 - - 40S ribosomal protein S15 [Morus notabilis]
15 Hb_000156_130 0.1473263638 - - hypothetical protein JCGZ_04605 [Jatropha curcas]
16 Hb_004117_180 0.1477958818 - - -
17 Hb_002272_260 0.1480806676 - - -
18 Hb_004374_200 0.148791178 - - putative GMP synthase [Oxybasis rubra]
19 Hb_007166_050 0.1498079948 - - -
20 Hb_001818_080 0.1508031097 - - PREDICTED: F-box protein At3g58530 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003746_060 Hb_003746_060 Hb_000617_320 Hb_000617_320 Hb_003746_060--Hb_000617_320 Hb_000094_020 Hb_000094_020 Hb_003746_060--Hb_000094_020 Hb_000193_350 Hb_000193_350 Hb_003746_060--Hb_000193_350 Hb_029888_020 Hb_029888_020 Hb_003746_060--Hb_029888_020 Hb_011257_010 Hb_011257_010 Hb_003746_060--Hb_011257_010 Hb_000995_050 Hb_000995_050 Hb_003746_060--Hb_000995_050 Hb_007166_050 Hb_007166_050 Hb_000617_320--Hb_007166_050 Hb_001019_090 Hb_001019_090 Hb_000617_320--Hb_001019_090 Hb_007632_250 Hb_007632_250 Hb_000617_320--Hb_007632_250 Hb_118977_020 Hb_118977_020 Hb_000617_320--Hb_118977_020 Hb_003086_110 Hb_003086_110 Hb_000617_320--Hb_003086_110 Hb_004297_100 Hb_004297_100 Hb_000617_320--Hb_004297_100 Hb_000094_020--Hb_004297_100 Hb_002316_060 Hb_002316_060 Hb_000094_020--Hb_002316_060 Hb_004807_060 Hb_004807_060 Hb_000094_020--Hb_004807_060 Hb_005611_010 Hb_005611_010 Hb_000094_020--Hb_005611_010 Hb_005496_030 Hb_005496_030 Hb_000094_020--Hb_005496_030 Hb_000175_400 Hb_000175_400 Hb_000193_350--Hb_000175_400 Hb_003687_020 Hb_003687_020 Hb_000193_350--Hb_003687_020 Hb_005224_050 Hb_005224_050 Hb_000193_350--Hb_005224_050 Hb_000189_530 Hb_000189_530 Hb_000193_350--Hb_000189_530 Hb_017711_010 Hb_017711_010 Hb_000193_350--Hb_017711_010 Hb_011016_090 Hb_011016_090 Hb_000193_350--Hb_011016_090 Hb_086703_010 Hb_086703_010 Hb_029888_020--Hb_086703_010 Hb_029888_020--Hb_004807_060 Hb_029888_020--Hb_000193_350 Hb_029888_020--Hb_017711_010 Hb_004502_080 Hb_004502_080 Hb_029888_020--Hb_004502_080 Hb_000723_090 Hb_000723_090 Hb_011257_010--Hb_000723_090 Hb_000465_040 Hb_000465_040 Hb_011257_010--Hb_000465_040 Hb_004944_010 Hb_004944_010 Hb_011257_010--Hb_004944_010 Hb_023001_050 Hb_023001_050 Hb_011257_010--Hb_023001_050 Hb_000349_060 Hb_000349_060 Hb_011257_010--Hb_000349_060 Hb_000084_290 Hb_000084_290 Hb_011257_010--Hb_000084_290 Hb_120221_010 Hb_120221_010 Hb_000995_050--Hb_120221_010 Hb_000453_260 Hb_000453_260 Hb_000995_050--Hb_000453_260 Hb_000156_130 Hb_000156_130 Hb_000995_050--Hb_000156_130 Hb_002259_030 Hb_002259_030 Hb_000995_050--Hb_002259_030 Hb_000510_090 Hb_000510_090 Hb_000995_050--Hb_000510_090 Hb_005916_030 Hb_005916_030 Hb_000995_050--Hb_005916_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.271977 0.169193 0.0968557 0.125618 0.271037 0.706563
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.556193 0.582893 0.128481 0.148913 0

CAGE analysis