Hb_003747_030

Information

Type -
Description -
Location Contig3747: 23478-24569
Sequence    

Annotation

kegg
ID rcu:RCOM_1443630
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012067416.1
description PREDICTED: pentatricopeptide repeat-containing protein At3g26630, chloroplastic-like [Jatropha curcas]
swissprot
ID Q38959
description Pentatricopeptide repeat-containing protein At3g26630, chloroplastic OS=Arabidopsis thaliana GN=PCMP-A6 PE=2 SV=1
trembl
ID A0A067LBM9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26918 PE=4 SV=1
Gene Ontology
ID GO:0016787
description pentatricopeptide repeat-containing protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38206: 24069-24355
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003747_030 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At3g26630, chloroplastic-like [Jatropha curcas]
2 Hb_183612_100 0.1075092453 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 22 [Jatropha curcas]
3 Hb_001157_030 0.1116799402 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66500, mitochondrial [Jatropha curcas]
4 Hb_002890_280 0.1160259604 - - hypothetical protein PRUPE_ppa009665mg [Prunus persica]
5 Hb_000018_190 0.1184195454 - - tocopherol cyclase [Hevea brasiliensis]
6 Hb_000056_100 0.1219663521 - - PREDICTED: uncharacterized protein LOC105630404 isoform X1 [Jatropha curcas]
7 Hb_003025_090 0.123959629 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
8 Hb_000856_340 0.1262506567 - - PREDICTED: uncharacterized protein LOC105640501 [Jatropha curcas]
9 Hb_001478_050 0.12882574 - - PREDICTED: uncharacterized protein LOC105640307 [Jatropha curcas]
10 Hb_000329_040 0.1288713779 - - PREDICTED: UDP-glucuronate 4-epimerase 3 [Jatropha curcas]
11 Hb_178968_110 0.1313313841 - - PREDICTED: uncharacterized protein LOC105630268 [Jatropha curcas]
12 Hb_000634_100 0.1320595384 - - hypothetical protein PRUPE_ppa013350mg [Prunus persica]
13 Hb_092706_020 0.1325471455 - - PREDICTED: uncharacterized protein LOC105637876 isoform X1 [Jatropha curcas]
14 Hb_000173_170 0.1331562009 - - PREDICTED: UPF0613 protein PB24D3.06c [Jatropha curcas]
15 Hb_004951_040 0.135726684 - - PREDICTED: pentatricopeptide repeat-containing protein At1g31790-like [Jatropha curcas]
16 Hb_002794_030 0.1359229654 - - hypothetical protein JCGZ_20185 [Jatropha curcas]
17 Hb_000412_110 0.1371332606 - - Rop4 [Hevea brasiliensis]
18 Hb_002326_030 0.1375983272 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein REM16-like isoform X1 [Jatropha curcas]
19 Hb_003376_120 0.1394684228 - - PREDICTED: cell number regulator 8 [Jatropha curcas]
20 Hb_006501_040 0.1412006987 - - PREDICTED: pentatricopeptide repeat-containing protein At1g77170 [Jatropha curcas]

Gene co-expression network

sample Hb_003747_030 Hb_003747_030 Hb_183612_100 Hb_183612_100 Hb_003747_030--Hb_183612_100 Hb_001157_030 Hb_001157_030 Hb_003747_030--Hb_001157_030 Hb_002890_280 Hb_002890_280 Hb_003747_030--Hb_002890_280 Hb_000018_190 Hb_000018_190 Hb_003747_030--Hb_000018_190 Hb_000056_100 Hb_000056_100 Hb_003747_030--Hb_000056_100 Hb_003025_090 Hb_003025_090 Hb_003747_030--Hb_003025_090 Hb_008085_040 Hb_008085_040 Hb_183612_100--Hb_008085_040 Hb_152439_020 Hb_152439_020 Hb_183612_100--Hb_152439_020 Hb_000861_040 Hb_000861_040 Hb_183612_100--Hb_000861_040 Hb_004951_040 Hb_004951_040 Hb_183612_100--Hb_004951_040 Hb_004882_020 Hb_004882_020 Hb_183612_100--Hb_004882_020 Hb_001157_030--Hb_002890_280 Hb_009382_020 Hb_009382_020 Hb_001157_030--Hb_009382_020 Hb_003861_080 Hb_003861_080 Hb_001157_030--Hb_003861_080 Hb_001981_090 Hb_001981_090 Hb_001157_030--Hb_001981_090 Hb_000805_090 Hb_000805_090 Hb_001157_030--Hb_000805_090 Hb_006501_040 Hb_006501_040 Hb_001157_030--Hb_006501_040 Hb_000975_290 Hb_000975_290 Hb_002890_280--Hb_000975_290 Hb_007672_010 Hb_007672_010 Hb_002890_280--Hb_007672_010 Hb_005062_070 Hb_005062_070 Hb_002890_280--Hb_005062_070 Hb_002890_280--Hb_009382_020 Hb_000754_060 Hb_000754_060 Hb_002890_280--Hb_000754_060 Hb_003777_180 Hb_003777_180 Hb_000018_190--Hb_003777_180 Hb_003018_140 Hb_003018_140 Hb_000018_190--Hb_003018_140 Hb_000412_110 Hb_000412_110 Hb_000018_190--Hb_000412_110 Hb_000329_040 Hb_000329_040 Hb_000018_190--Hb_000329_040 Hb_000260_080 Hb_000260_080 Hb_000018_190--Hb_000260_080 Hb_010863_080 Hb_010863_080 Hb_000056_100--Hb_010863_080 Hb_000500_040 Hb_000500_040 Hb_000056_100--Hb_000500_040 Hb_000124_020 Hb_000124_020 Hb_000056_100--Hb_000124_020 Hb_000056_100--Hb_002890_280 Hb_000856_340 Hb_000856_340 Hb_000056_100--Hb_000856_340 Hb_000056_100--Hb_003861_080 Hb_001913_010 Hb_001913_010 Hb_003025_090--Hb_001913_010 Hb_002399_010 Hb_002399_010 Hb_003025_090--Hb_002399_010 Hb_178968_110 Hb_178968_110 Hb_003025_090--Hb_178968_110 Hb_000179_210 Hb_000179_210 Hb_003025_090--Hb_000179_210 Hb_003929_260 Hb_003929_260 Hb_003025_090--Hb_003929_260 Hb_003297_030 Hb_003297_030 Hb_003025_090--Hb_003297_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.8844 3.73988 2.99843 1.5751 8.79575 10.4634
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.139 19.1685 22.3044 3.91832 1.98711

CAGE analysis