Hb_003747_080

Information

Type -
Description -
Location Contig3747: 84840-85821
Sequence    

Annotation

kegg
ID rcu:RCOM_1443650
description chloroplast-targeted copper chaperone, putative
nr
ID XP_002512789.1
description chloroplast-targeted copper chaperone, putative [Ricinus communis]
swissprot
ID Q9SZN7
description Heavy metal-associated isoprenylated plant protein 26 OS=Arabidopsis thaliana GN=HIPP26 PE=1 SV=1
trembl
ID B9RGT0
description Chloroplast-targeted copper chaperone, putative OS=Ricinus communis GN=RCOM_1443650 PE=4 SV=1
Gene Ontology
ID GO:0046872
description chloroplast-targeted copper

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003747_080 0.0 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
2 Hb_000203_110 0.0374332178 - - -
3 Hb_181191_010 0.0512059842 - - kinase, putative [Ricinus communis]
4 Hb_137821_010 0.0534797051 - - hypothetical protein CISIN_1g034189mg [Citrus sinensis]
5 Hb_120496_010 0.0649322996 - - PREDICTED: CSC1-like protein At1g32090 [Cicer arietinum]
6 Hb_000527_090 0.0708632243 - - serine carboxypeptidase, putative [Ricinus communis]
7 Hb_008727_090 0.0752625303 - - PREDICTED: 17.3 kDa class I heat shock protein-like [Jatropha curcas]
8 Hb_000203_120 0.0764826711 - - conserved hypothetical protein [Ricinus communis]
9 Hb_005463_120 0.0794037653 - - gibberellin 20-oxidase, putative [Ricinus communis]
10 Hb_001104_290 0.0856077818 transcription factor TF Family: ERF Dehydration-responsive element-binding protein 1B, putative [Theobroma cacao]
11 Hb_006452_080 0.0883724214 - - Nodulin, putative [Ricinus communis]
12 Hb_000363_100 0.0883994291 - - -
13 Hb_011689_090 0.0885495099 - - PREDICTED: uncharacterized protein LOC105631865 [Jatropha curcas]
14 Hb_015085_010 0.0964437956 - - hypothetical protein POPTR_0018s11360g [Populus trichocarpa]
15 Hb_006275_080 0.0968128725 - - PREDICTED: protein WALLS ARE THIN 1 [Jatropha curcas]
16 Hb_007441_320 0.0972801944 - - PREDICTED: putative invertase inhibitor [Jatropha curcas]
17 Hb_041067_010 0.1002838082 - - hypothetical protein JCGZ_00780 [Jatropha curcas]
18 Hb_003252_030 0.1022468658 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
19 Hb_116679_010 0.1033971194 - - PREDICTED: transcription factor bHLH110 isoform X2 [Vitis vinifera]
20 Hb_000629_140 0.1044983379 - - hypothetical protein SORBIDRAFT_04g013083 [Sorghum bicolor]

Gene co-expression network

sample Hb_003747_080 Hb_003747_080 Hb_000203_110 Hb_000203_110 Hb_003747_080--Hb_000203_110 Hb_181191_010 Hb_181191_010 Hb_003747_080--Hb_181191_010 Hb_137821_010 Hb_137821_010 Hb_003747_080--Hb_137821_010 Hb_120496_010 Hb_120496_010 Hb_003747_080--Hb_120496_010 Hb_000527_090 Hb_000527_090 Hb_003747_080--Hb_000527_090 Hb_008727_090 Hb_008727_090 Hb_003747_080--Hb_008727_090 Hb_000203_110--Hb_181191_010 Hb_000203_120 Hb_000203_120 Hb_000203_110--Hb_000203_120 Hb_000203_110--Hb_008727_090 Hb_000203_110--Hb_120496_010 Hb_000203_110--Hb_137821_010 Hb_181191_010--Hb_008727_090 Hb_181191_010--Hb_000203_120 Hb_181191_010--Hb_120496_010 Hb_000363_100 Hb_000363_100 Hb_181191_010--Hb_000363_100 Hb_005463_120 Hb_005463_120 Hb_137821_010--Hb_005463_120 Hb_137821_010--Hb_000527_090 Hb_000048_120 Hb_000048_120 Hb_137821_010--Hb_000048_120 Hb_125152_010 Hb_125152_010 Hb_137821_010--Hb_125152_010 Hb_000629_140 Hb_000629_140 Hb_137821_010--Hb_000629_140 Hb_001277_390 Hb_001277_390 Hb_120496_010--Hb_001277_390 Hb_118941_010 Hb_118941_010 Hb_120496_010--Hb_118941_010 Hb_000224_070 Hb_000224_070 Hb_120496_010--Hb_000224_070 Hb_007441_320 Hb_007441_320 Hb_120496_010--Hb_007441_320 Hb_006452_080 Hb_006452_080 Hb_000527_090--Hb_006452_080 Hb_000527_090--Hb_007441_320 Hb_007472_060 Hb_007472_060 Hb_000527_090--Hb_007472_060 Hb_000527_090--Hb_000048_120 Hb_008727_090--Hb_000203_120 Hb_000917_220 Hb_000917_220 Hb_008727_090--Hb_000917_220 Hb_018671_010 Hb_018671_010 Hb_008727_090--Hb_018671_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0629199 0.0234534 0.998734 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis