Hb_003747_130

Information

Type -
Description -
Location Contig3747: 122215-128058
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38216: 120964-121532
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003747_130 0.0 - - -
2 Hb_000866_150 0.236146424 - - -
3 Hb_003540_130 0.2557512648 - - -
4 Hb_002843_160 0.2737046871 - - PREDICTED: leucine-rich repeat receptor-like protein kinase PEPR1 [Jatropha curcas]
5 Hb_002243_040 0.2772678119 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_00227 [Jatropha curcas]
6 Hb_000483_420 0.2812615699 - - PREDICTED: putative glycerol-3-phosphate transporter 4 [Jatropha curcas]
7 Hb_003073_130 0.291310709 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1-like [Jatropha curcas]
8 Hb_002890_230 0.291589757 - - hypothetical protein MTR_5g084920 [Medicago truncatula]
9 Hb_000907_100 0.2931588801 transcription factor TF Family: zf-HD hypothetical protein POPTR_0012s03770g, partial [Populus trichocarpa]
10 Hb_011640_020 0.2946016931 - - hypothetical protein VITISV_036432 [Vitis vinifera]
11 Hb_004032_080 0.2956632353 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL11 [Jatropha curcas]
12 Hb_004884_060 0.3004031099 transcription factor TF Family: G2-like PREDICTED: putative Myb family transcription factor At1g14600 [Jatropha curcas]
13 Hb_000590_040 0.3017406191 - - hypothetical protein MPER_09217 [Moniliophthora perniciosa FA553]
14 Hb_004324_350 0.3029099186 - - PREDICTED: uncharacterized protein LOC103484146 [Cucumis melo]
15 Hb_005867_080 0.3055584745 - - PREDICTED: protein NETWORKED 2A [Jatropha curcas]
16 Hb_000249_110 0.3062172159 - - hypothetical protein JCGZ_22462 [Jatropha curcas]
17 Hb_007810_060 0.3106583576 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000457_160 0.3111507653 - - PREDICTED: uncharacterized protein LOC105633076 [Jatropha curcas]
19 Hb_000421_190 0.3118542829 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001004_040 0.3148895589 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003747_130 Hb_003747_130 Hb_000866_150 Hb_000866_150 Hb_003747_130--Hb_000866_150 Hb_003540_130 Hb_003540_130 Hb_003747_130--Hb_003540_130 Hb_002843_160 Hb_002843_160 Hb_003747_130--Hb_002843_160 Hb_002243_040 Hb_002243_040 Hb_003747_130--Hb_002243_040 Hb_000483_420 Hb_000483_420 Hb_003747_130--Hb_000483_420 Hb_003073_130 Hb_003073_130 Hb_003747_130--Hb_003073_130 Hb_070926_010 Hb_070926_010 Hb_000866_150--Hb_070926_010 Hb_128558_010 Hb_128558_010 Hb_000866_150--Hb_128558_010 Hb_000866_150--Hb_000483_420 Hb_165666_010 Hb_165666_010 Hb_000866_150--Hb_165666_010 Hb_004324_350 Hb_004324_350 Hb_000866_150--Hb_004324_350 Hb_000590_040 Hb_000590_040 Hb_003540_130--Hb_000590_040 Hb_003540_130--Hb_000483_420 Hb_001004_040 Hb_001004_040 Hb_003540_130--Hb_001004_040 Hb_085863_020 Hb_085863_020 Hb_003540_130--Hb_085863_020 Hb_019654_080 Hb_019654_080 Hb_003540_130--Hb_019654_080 Hb_002989_080 Hb_002989_080 Hb_002843_160--Hb_002989_080 Hb_000249_110 Hb_000249_110 Hb_002843_160--Hb_000249_110 Hb_000789_190 Hb_000789_190 Hb_002843_160--Hb_000789_190 Hb_014067_010 Hb_014067_010 Hb_002843_160--Hb_014067_010 Hb_004884_060 Hb_004884_060 Hb_002843_160--Hb_004884_060 Hb_003906_110 Hb_003906_110 Hb_002843_160--Hb_003906_110 Hb_001195_390 Hb_001195_390 Hb_002243_040--Hb_001195_390 Hb_130788_010 Hb_130788_010 Hb_002243_040--Hb_130788_010 Hb_005470_010 Hb_005470_010 Hb_002243_040--Hb_005470_010 Hb_000160_200 Hb_000160_200 Hb_002243_040--Hb_000160_200 Hb_046440_010 Hb_046440_010 Hb_002243_040--Hb_046440_010 Hb_001946_280 Hb_001946_280 Hb_002243_040--Hb_001946_280 Hb_000576_040 Hb_000576_040 Hb_000483_420--Hb_000576_040 Hb_002739_110 Hb_002739_110 Hb_000483_420--Hb_002739_110 Hb_152439_020 Hb_152439_020 Hb_000483_420--Hb_152439_020 Hb_000193_250 Hb_000193_250 Hb_000483_420--Hb_000193_250 Hb_000483_420--Hb_004324_350 Hb_000249_130 Hb_000249_130 Hb_000483_420--Hb_000249_130 Hb_000061_410 Hb_000061_410 Hb_003073_130--Hb_000061_410 Hb_000155_070 Hb_000155_070 Hb_003073_130--Hb_000155_070 Hb_003073_130--Hb_014067_010 Hb_000907_100 Hb_000907_100 Hb_003073_130--Hb_000907_100 Hb_003627_020 Hb_003627_020 Hb_003073_130--Hb_003627_020 Hb_003073_130--Hb_004884_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.238493 0 0 0 0.117283 0.282778
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0723679 0.383072 0 0

CAGE analysis