Hb_003747_160

Information

Type -
Description -
Location Contig3747: 137913-138536
Sequence    

Annotation

kegg
ID rcu:RCOM_1443930
description hypothetical protein
nr
ID XP_002512797.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RGT8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1443930 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38218: 137770-138812
cDNA
(Sanger)
(ID:Location)		 009_L03.ab1: 137774-138278 , 017_K10.ab1: 137770-138385 , 031_I22.ab1: 137770-138563 , 039_G10.ab1: 137771-138524

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003747_160 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001051_060 0.0385257038 - - UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter, putative [Ricinus communis]
3 Hb_015807_090 0.0404128981 - - PREDICTED: probable galacturonosyltransferase 12 [Jatropha curcas]
4 Hb_011224_070 0.0499997567 - - PREDICTED: solute carrier family 35 member E3 [Jatropha curcas]
5 Hb_005686_040 0.0503663203 - - conserved hypothetical protein [Ricinus communis]
6 Hb_009476_080 0.0515457916 - - BnaA03g18920D [Brassica napus]
7 Hb_004225_120 0.0548099049 - - PREDICTED: uncharacterized protein LOC105628059 [Jatropha curcas]
8 Hb_000086_490 0.0572990274 - - cellulose synthase [Populus tomentosa]
9 Hb_002835_360 0.0581745526 transcription factor TF Family: MYB hypothetical protein POPTR_0015s09430g [Populus trichocarpa]
10 Hb_005614_020 0.0591361847 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 isoform X1 [Jatropha curcas]
11 Hb_002078_180 0.0601712444 - - PREDICTED: 65-kDa microtubule-associated protein 8 [Jatropha curcas]
12 Hb_003376_060 0.0616275382 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX9 isoform X1 [Jatropha curcas]
13 Hb_002499_030 0.0620179058 - - receptor-kinase, putative [Ricinus communis]
14 Hb_001511_220 0.0647015762 - - hypothetical protein POPTR_0008s06990g [Populus trichocarpa]
15 Hb_005523_030 0.0654009828 - - PREDICTED: probable galacturonosyltransferase 12 [Jatropha curcas]
16 Hb_070771_010 0.0684987866 - - PREDICTED: uncharacterized membrane protein At1g06890 [Jatropha curcas]
17 Hb_002662_070 0.071022946 - - hypothetical protein JCGZ_16102 [Jatropha curcas]
18 Hb_001269_160 0.0723474101 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001096_010 0.0738497175 - - PREDICTED: uncharacterized protein LOC105650448 [Jatropha curcas]
20 Hb_042083_010 0.074085384 - - PREDICTED: cellulose synthase A catalytic subunit 8 [UDP-forming] [Jatropha curcas]

Gene co-expression network

sample Hb_003747_160 Hb_003747_160 Hb_001051_060 Hb_001051_060 Hb_003747_160--Hb_001051_060 Hb_015807_090 Hb_015807_090 Hb_003747_160--Hb_015807_090 Hb_011224_070 Hb_011224_070 Hb_003747_160--Hb_011224_070 Hb_005686_040 Hb_005686_040 Hb_003747_160--Hb_005686_040 Hb_009476_080 Hb_009476_080 Hb_003747_160--Hb_009476_080 Hb_004225_120 Hb_004225_120 Hb_003747_160--Hb_004225_120 Hb_001051_060--Hb_005686_040 Hb_000086_490 Hb_000086_490 Hb_001051_060--Hb_000086_490 Hb_005523_030 Hb_005523_030 Hb_001051_060--Hb_005523_030 Hb_001051_060--Hb_015807_090 Hb_002078_180 Hb_002078_180 Hb_001051_060--Hb_002078_180 Hb_015807_090--Hb_000086_490 Hb_015807_090--Hb_005523_030 Hb_015807_090--Hb_002078_180 Hb_015807_090--Hb_005686_040 Hb_003376_060 Hb_003376_060 Hb_011224_070--Hb_003376_060 Hb_011224_070--Hb_004225_120 Hb_001511_220 Hb_001511_220 Hb_011224_070--Hb_001511_220 Hb_001096_010 Hb_001096_010 Hb_011224_070--Hb_001096_010 Hb_005614_020 Hb_005614_020 Hb_011224_070--Hb_005614_020 Hb_005686_040--Hb_002078_180 Hb_005686_040--Hb_000086_490 Hb_002835_360 Hb_002835_360 Hb_005686_040--Hb_002835_360 Hb_005686_040--Hb_005523_030 Hb_009476_080--Hb_002078_180 Hb_009476_080--Hb_015807_090 Hb_009476_080--Hb_002835_360 Hb_009476_080--Hb_005686_040 Hb_009476_080--Hb_001051_060 Hb_004225_120--Hb_003376_060 Hb_004225_120--Hb_005614_020 Hb_070771_010 Hb_070771_010 Hb_004225_120--Hb_070771_010 Hb_004225_120--Hb_001051_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.578265 29.374 42.3892 509.869 0.441171 0.176803
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.131745 2.91172 273.022

CAGE analysis