Hb_003747_190

Information

Type -
Description -
Location Contig3747: 155708-163383
Sequence    

Annotation

kegg
ID pxb:103966622
description uncharacterized LOC103966622
nr
ID XP_009378082.1
description PREDICTED: uncharacterized protein LOC103966622 [Pyrus x bretschneideri]
swissprot
ID Q8RWF4
description Probable magnesium transporter NIPA8 OS=Arabidopsis thaliana GN=At3g26670 PE=2 SV=1
trembl
ID A0A067L0D9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26905 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable magnesium transporter nipa8 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38220: 156328-157069 , PASA_asmbl_38221: 158032-160249 , PASA_asmbl_38222: 161531-162495 , PASA_asmbl_38223: 162536-163061
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003747_190 0.0 - - PREDICTED: uncharacterized protein LOC103966622 [Pyrus x bretschneideri]
2 Hb_000213_010 0.0851743379 - - PREDICTED: villin-3-like isoform X1 [Populus euphratica]
3 Hb_000667_030 0.0902169666 - - PREDICTED: protein transport protein SEC23-like [Jatropha curcas]
4 Hb_000789_250 0.0906696493 - - PREDICTED: uncharacterized protein LOC105637809 [Jatropha curcas]
5 Hb_000009_500 0.0930117283 - - PREDICTED: NASP-related protein sim3 [Jatropha curcas]
6 Hb_021297_050 0.0939094134 - - PREDICTED: signal recognition particle receptor subunit alpha [Jatropha curcas]
7 Hb_001221_080 0.0946754966 - - PREDICTED: conserved oligomeric Golgi complex subunit 2 isoform X2 [Jatropha curcas]
8 Hb_002728_080 0.0951767921 - - WD-repeat protein, putative [Ricinus communis]
9 Hb_013399_020 0.0955970613 - - PREDICTED: developmentally-regulated G-protein 2 [Jatropha curcas]
10 Hb_000637_110 0.0957045788 - - hypothetical protein B456_013G081300 [Gossypium raimondii]
11 Hb_000856_040 0.0968167509 transcription factor TF Family: DDT PREDICTED: uncharacterized protein LOC105640470 [Jatropha curcas]
12 Hb_000088_170 0.0974447981 - - PREDICTED: ran-binding protein 10-like [Jatropha curcas]
13 Hb_000037_190 0.0975674843 - - PREDICTED: uncharacterized protein LOC105641500 [Jatropha curcas]
14 Hb_003504_030 0.0979960782 - - PREDICTED: serine/threonine-protein phosphatase PP1-like isoform X2 [Jatropha curcas]
15 Hb_000029_300 0.0984230883 - - hypothetical protein JCGZ_10048 [Jatropha curcas]
16 Hb_000313_120 0.0991711239 - - PREDICTED: ALG-2 interacting protein X [Jatropha curcas]
17 Hb_002213_070 0.1007508753 - - epsilon-adaptin family protein [Populus trichocarpa]
18 Hb_000174_270 0.1012394166 - - PREDICTED: type II inositol 1,4,5-trisphosphate 5-phosphatase FRA3 isoform X1 [Jatropha curcas]
19 Hb_020378_030 0.1013460588 - - PREDICTED: protein transport protein SEC31 homolog B [Jatropha curcas]
20 Hb_003683_020 0.1026385551 - - serine/threonine protein kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_003747_190 Hb_003747_190 Hb_000213_010 Hb_000213_010 Hb_003747_190--Hb_000213_010 Hb_000667_030 Hb_000667_030 Hb_003747_190--Hb_000667_030 Hb_000789_250 Hb_000789_250 Hb_003747_190--Hb_000789_250 Hb_000009_500 Hb_000009_500 Hb_003747_190--Hb_000009_500 Hb_021297_050 Hb_021297_050 Hb_003747_190--Hb_021297_050 Hb_001221_080 Hb_001221_080 Hb_003747_190--Hb_001221_080 Hb_012022_090 Hb_012022_090 Hb_000213_010--Hb_012022_090 Hb_000029_300 Hb_000029_300 Hb_000213_010--Hb_000029_300 Hb_000213_010--Hb_001221_080 Hb_000213_010--Hb_021297_050 Hb_003683_020 Hb_003683_020 Hb_000213_010--Hb_003683_020 Hb_000116_500 Hb_000116_500 Hb_000213_010--Hb_000116_500 Hb_010294_010 Hb_010294_010 Hb_000667_030--Hb_010294_010 Hb_005215_010 Hb_005215_010 Hb_000667_030--Hb_005215_010 Hb_012518_070 Hb_012518_070 Hb_000667_030--Hb_012518_070 Hb_000667_030--Hb_021297_050 Hb_000494_050 Hb_000494_050 Hb_000667_030--Hb_000494_050 Hb_000317_100 Hb_000317_100 Hb_000667_030--Hb_000317_100 Hb_000313_120 Hb_000313_120 Hb_000789_250--Hb_000313_120 Hb_020378_030 Hb_020378_030 Hb_000789_250--Hb_020378_030 Hb_012395_140 Hb_012395_140 Hb_000789_250--Hb_012395_140 Hb_000537_050 Hb_000537_050 Hb_000789_250--Hb_000537_050 Hb_001369_130 Hb_001369_130 Hb_000789_250--Hb_001369_130 Hb_004586_220 Hb_004586_220 Hb_000789_250--Hb_004586_220 Hb_011849_040 Hb_011849_040 Hb_000009_500--Hb_011849_040 Hb_000402_230 Hb_000402_230 Hb_000009_500--Hb_000402_230 Hb_079326_020 Hb_079326_020 Hb_000009_500--Hb_079326_020 Hb_002026_210 Hb_002026_210 Hb_000009_500--Hb_002026_210 Hb_004109_230 Hb_004109_230 Hb_000009_500--Hb_004109_230 Hb_000614_210 Hb_000614_210 Hb_000009_500--Hb_000614_210 Hb_021297_050--Hb_000116_500 Hb_001195_320 Hb_001195_320 Hb_021297_050--Hb_001195_320 Hb_001860_040 Hb_001860_040 Hb_021297_050--Hb_001860_040 Hb_021297_050--Hb_000029_300 Hb_000441_220 Hb_000441_220 Hb_001221_080--Hb_000441_220 Hb_001408_140 Hb_001408_140 Hb_001221_080--Hb_001408_140 Hb_001221_080--Hb_000029_300 Hb_002909_140 Hb_002909_140 Hb_001221_080--Hb_002909_140 Hb_013399_020 Hb_013399_020 Hb_001221_080--Hb_013399_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.01709 6.95213 5.06138 8.90352 7.38434 5.48179
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.44295 2.82768 7.02049 5.41124 5.33969

CAGE analysis