Hb_003747_200

Information

Type -
Description -
Location Contig3747: 165608-168869
Sequence    

Annotation

kegg
ID rcu:RCOM_1443960
description DNA cross-link repair protein pso2/snm1, putative
nr
ID XP_012067400.1
description PREDICTED: DNA cross-link repair protein SNM1 [Jatropha curcas]
swissprot
ID Q38961
description DNA cross-link repair protein SNM1 OS=Arabidopsis thaliana GN=SNM1 PE=2 SV=1
trembl
ID A0A067L0A7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26904 PE=4 SV=1
Gene Ontology
ID GO:0005634
description dna cross-link repair protein snm1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38224: 165607-168959 , PASA_asmbl_38225: 166402-167758
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003747_200 0.0 - - PREDICTED: DNA cross-link repair protein SNM1 [Jatropha curcas]
2 Hb_000771_120 0.0726892322 - - PREDICTED: uncharacterized protein LOC105648352 isoform X1 [Jatropha curcas]
3 Hb_002490_020 0.0765625061 - - peptidyl-tRNA hydrolase family protein [Populus trichocarpa]
4 Hb_000302_270 0.0878875933 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]
5 Hb_002016_150 0.0904624378 - - PREDICTED: uncharacterized protein LOC105642512 [Jatropha curcas]
6 Hb_142368_010 0.0930093346 - - mRNA (guanine-7-)methyltransferase, putative [Ricinus communis]
7 Hb_002141_030 0.0973079474 - - conserved hypothetical protein [Ricinus communis]
8 Hb_004195_270 0.0977204405 - - Ubiquitin-conjugating enzyme 16 [Theobroma cacao]
9 Hb_010222_020 0.0985400589 - - PREDICTED: uncharacterized protein LOC105647642 [Jatropha curcas]
10 Hb_002686_170 0.0989871282 - - PREDICTED: uncharacterized protein LOC105632645 isoform X1 [Jatropha curcas]
11 Hb_027380_050 0.0992623957 - - PREDICTED: pentatricopeptide repeat-containing protein At1g11290-like [Jatropha curcas]
12 Hb_000329_320 0.0996312447 - - PREDICTED: DNA ligase 1 [Jatropha curcas]
13 Hb_005488_140 0.1009634855 - - 30S ribosomal protein S5, putative [Ricinus communis]
14 Hb_000205_090 0.1015605954 - - hypothetical protein POPTR_0019s03570g [Populus trichocarpa]
15 Hb_019280_050 0.1016666929 - - PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2 [Jatropha curcas]
16 Hb_000039_220 0.1018043553 - - PREDICTED: vesicle-associated protein 4-2-like [Gossypium raimondii]
17 Hb_000403_050 0.1019425271 - - PREDICTED: protein SLOW GREEN 1, chloroplastic [Jatropha curcas]
18 Hb_000053_110 0.1024193142 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000917_060 0.1028374675 - - PREDICTED: GTP-binding protein At2g22870 [Jatropha curcas]
20 Hb_000789_060 0.1044365532 - - PREDICTED: mitogen-activated protein kinase kinase 6 [Jatropha curcas]

Gene co-expression network

sample Hb_003747_200 Hb_003747_200 Hb_000771_120 Hb_000771_120 Hb_003747_200--Hb_000771_120 Hb_002490_020 Hb_002490_020 Hb_003747_200--Hb_002490_020 Hb_000302_270 Hb_000302_270 Hb_003747_200--Hb_000302_270 Hb_002016_150 Hb_002016_150 Hb_003747_200--Hb_002016_150 Hb_142368_010 Hb_142368_010 Hb_003747_200--Hb_142368_010 Hb_002141_030 Hb_002141_030 Hb_003747_200--Hb_002141_030 Hb_025645_010 Hb_025645_010 Hb_000771_120--Hb_025645_010 Hb_000771_120--Hb_000302_270 Hb_007477_070 Hb_007477_070 Hb_000771_120--Hb_007477_070 Hb_001404_100 Hb_001404_100 Hb_000771_120--Hb_001404_100 Hb_028995_040 Hb_028995_040 Hb_000771_120--Hb_028995_040 Hb_000329_320 Hb_000329_320 Hb_002490_020--Hb_000329_320 Hb_004195_270 Hb_004195_270 Hb_002490_020--Hb_004195_270 Hb_010222_020 Hb_010222_020 Hb_002490_020--Hb_010222_020 Hb_002490_020--Hb_002141_030 Hb_002600_090 Hb_002600_090 Hb_002490_020--Hb_002600_090 Hb_000521_320 Hb_000521_320 Hb_000302_270--Hb_000521_320 Hb_000185_070 Hb_000185_070 Hb_000302_270--Hb_000185_070 Hb_000010_400 Hb_000010_400 Hb_000302_270--Hb_000010_400 Hb_004678_040 Hb_004678_040 Hb_000302_270--Hb_004678_040 Hb_000789_060 Hb_000789_060 Hb_000302_270--Hb_000789_060 Hb_007304_120 Hb_007304_120 Hb_002016_150--Hb_007304_120 Hb_000679_010 Hb_000679_010 Hb_002016_150--Hb_000679_010 Hb_002016_150--Hb_000771_120 Hb_000462_130 Hb_000462_130 Hb_002016_150--Hb_000462_130 Hb_002016_150--Hb_000521_320 Hb_021576_100 Hb_021576_100 Hb_142368_010--Hb_021576_100 Hb_152175_010 Hb_152175_010 Hb_142368_010--Hb_152175_010 Hb_003001_080 Hb_003001_080 Hb_142368_010--Hb_003001_080 Hb_001227_030 Hb_001227_030 Hb_142368_010--Hb_001227_030 Hb_005137_050 Hb_005137_050 Hb_142368_010--Hb_005137_050 Hb_001862_210 Hb_001862_210 Hb_142368_010--Hb_001862_210 Hb_000521_080 Hb_000521_080 Hb_002141_030--Hb_000521_080 Hb_000365_120 Hb_000365_120 Hb_002141_030--Hb_000365_120 Hb_000403_050 Hb_000403_050 Hb_002141_030--Hb_000403_050 Hb_002107_030 Hb_002107_030 Hb_002141_030--Hb_002107_030 Hb_000059_330 Hb_000059_330 Hb_002141_030--Hb_000059_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.66321 3.19486 4.77373 1.51695 2.57034 3.21009
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.54038 4.88387 4.04572 2.67748 2.63638

CAGE analysis