Hb_003747_230

Information

Type -
Description -
Location Contig3747: 195724-203654
Sequence    

Annotation

kegg
ID pop:POPTR_0014s14190g
description POPTRDRAFT_572874; DEAD/DEAH box helicase family protein
nr
ID XP_012067396.1
description PREDICTED: uncharacterized protein LOC105630239 isoform X1 [Jatropha curcas]
swissprot
ID Q55750
description Transcription-repair-coupling factor OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=mfd PE=3 SV=1
trembl
ID B9IA74
description DEAD/DEAH box helicase family protein OS=Populus trichocarpa GN=POPTR_0014s14190g PE=4 SV=1
Gene Ontology
ID GO:0016020
description dead deah box helicase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38230: 195637-200632 , PASA_asmbl_38231: 195637-200632 , PASA_asmbl_38233: 201777-203393
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003747_230 0.0 - - PREDICTED: uncharacterized protein LOC105630239 isoform X1 [Jatropha curcas]
2 Hb_002759_190 0.0712734108 - - PREDICTED: protein NLRC3 [Jatropha curcas]
3 Hb_000317_260 0.0916655187 - - unknown [Populus trichocarpa]
4 Hb_001587_180 0.09326762 - - PREDICTED: peptide methionine sulfoxide reductase B5-like [Jatropha curcas]
5 Hb_005539_010 0.0950147333 - - PREDICTED: uncharacterized protein LOC105644585 [Jatropha curcas]
6 Hb_004440_060 0.0961253977 - - aldose 1-epimerase, putative [Ricinus communis]
7 Hb_000227_170 0.0974987355 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
8 Hb_011512_110 0.0993345334 - - PREDICTED: GDT1-like protein 2, chloroplastic isoform X1 [Jatropha curcas]
9 Hb_000811_070 0.0997731945 - - PREDICTED: uncharacterized protein LOC105650695 [Jatropha curcas]
10 Hb_001900_140 0.1004303584 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Jatropha curcas]
11 Hb_000580_150 0.1032385735 - - PREDICTED: probable tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial [Jatropha curcas]
12 Hb_001109_050 0.1034375641 - - PREDICTED: ankyrin-1 [Jatropha curcas]
13 Hb_005494_010 0.1039059482 - - catalytic, putative [Ricinus communis]
14 Hb_000364_050 0.1041715035 - - PREDICTED: CBS domain-containing protein CBSX1, chloroplastic [Jatropha curcas]
15 Hb_005127_030 0.1046092687 - - PREDICTED: tryptophan--tRNA ligase, mitochondrial isoform X2 [Jatropha curcas]
16 Hb_010863_050 0.1051979375 - - OTU domain-containing protein 6B, putative [Ricinus communis]
17 Hb_003411_090 0.1067419414 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase, putative [Ricinus communis]
18 Hb_012150_030 0.1076456052 - - PREDICTED: aspartate--tRNA ligase, mitochondrial [Jatropha curcas]
19 Hb_004452_120 0.1080772751 - - PREDICTED: uncharacterized protein LOC105639574 [Jatropha curcas]
20 Hb_011689_120 0.1083938104 - - PREDICTED: uncharacterized protein At4g15545 [Jatropha curcas]

Gene co-expression network

sample Hb_003747_230 Hb_003747_230 Hb_002759_190 Hb_002759_190 Hb_003747_230--Hb_002759_190 Hb_000317_260 Hb_000317_260 Hb_003747_230--Hb_000317_260 Hb_001587_180 Hb_001587_180 Hb_003747_230--Hb_001587_180 Hb_005539_010 Hb_005539_010 Hb_003747_230--Hb_005539_010 Hb_004440_060 Hb_004440_060 Hb_003747_230--Hb_004440_060 Hb_000227_170 Hb_000227_170 Hb_003747_230--Hb_000227_170 Hb_000012_250 Hb_000012_250 Hb_002759_190--Hb_000012_250 Hb_001863_380 Hb_001863_380 Hb_002759_190--Hb_001863_380 Hb_005494_010 Hb_005494_010 Hb_002759_190--Hb_005494_010 Hb_002759_190--Hb_000227_170 Hb_001900_140 Hb_001900_140 Hb_002759_190--Hb_001900_140 Hb_000317_260--Hb_004440_060 Hb_003411_090 Hb_003411_090 Hb_000317_260--Hb_003411_090 Hb_004951_060 Hb_004951_060 Hb_000317_260--Hb_004951_060 Hb_007904_230 Hb_007904_230 Hb_000317_260--Hb_007904_230 Hb_003266_030 Hb_003266_030 Hb_000317_260--Hb_003266_030 Hb_001369_790 Hb_001369_790 Hb_000317_260--Hb_001369_790 Hb_001587_180--Hb_001900_140 Hb_001287_040 Hb_001287_040 Hb_001587_180--Hb_001287_040 Hb_000003_780 Hb_000003_780 Hb_001587_180--Hb_000003_780 Hb_005946_040 Hb_005946_040 Hb_001587_180--Hb_005946_040 Hb_001935_100 Hb_001935_100 Hb_001587_180--Hb_001935_100 Hb_001541_110 Hb_001541_110 Hb_001587_180--Hb_001541_110 Hb_006538_120 Hb_006538_120 Hb_005539_010--Hb_006538_120 Hb_000212_440 Hb_000212_440 Hb_005539_010--Hb_000212_440 Hb_000941_100 Hb_000941_100 Hb_005539_010--Hb_000941_100 Hb_005539_010--Hb_001935_100 Hb_005539_010--Hb_000227_170 Hb_012150_030 Hb_012150_030 Hb_005539_010--Hb_012150_030 Hb_001578_020 Hb_001578_020 Hb_004440_060--Hb_001578_020 Hb_004440_060--Hb_001369_790 Hb_007534_050 Hb_007534_050 Hb_004440_060--Hb_007534_050 Hb_002053_010 Hb_002053_010 Hb_004440_060--Hb_002053_010 Hb_004644_030 Hb_004644_030 Hb_004440_060--Hb_004644_030 Hb_107879_010 Hb_107879_010 Hb_000227_170--Hb_107879_010 Hb_000227_170--Hb_001935_100 Hb_000025_780 Hb_000025_780 Hb_000227_170--Hb_000025_780 Hb_000227_170--Hb_005494_010 Hb_003029_070 Hb_003029_070 Hb_000227_170--Hb_003029_070 Hb_000304_070 Hb_000304_070 Hb_000227_170--Hb_000304_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.940303 0.731184 3.07421 1.09938 1.01352 0.895071
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.95864 1.92122 1.41301 1.52791 3.22181

CAGE analysis