Hb_003747_240

Information

Type transcription factor
Description TF Family: RB
Location Contig3747: 219396-223755
Sequence    

Annotation

kegg
ID rcu:RCOM_1444020
description hypothetical protein
nr
ID XP_002512806.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID B9SVG9
description Retinoblastoma-related protein OS=Ricinus communis GN=RBR PE=2 SV=1
trembl
ID B9RGU7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1444020 PE=4 SV=1
Gene Ontology
ID GO:0050794
description retinoblastoma-related protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38234: 220393-220661 , PASA_asmbl_38235: 221312-221928 , PASA_asmbl_38237: 223665-224086
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003747_240 0.0 transcription factor TF Family: RB conserved hypothetical protein [Ricinus communis]
2 Hb_000809_040 0.0961876574 - - Serine/threonine-protein kinase SAPK10, putative [Ricinus communis]
3 Hb_000163_290 0.0970943587 - - PREDICTED: nucleolar protein 16 [Jatropha curcas]
4 Hb_011174_070 0.0993080268 - - PREDICTED: pentatricopeptide repeat-containing protein At5g06540-like [Jatropha curcas]
5 Hb_006499_010 0.103881486 - - -
6 Hb_000138_040 0.1055835303 - - PREDICTED: uncharacterized protein LOC105646531 [Jatropha curcas]
7 Hb_003404_030 0.1076467477 - - PREDICTED: monogalactosyldiacylglycerol synthase 2, chloroplastic-like isoform X1 [Jatropha curcas]
8 Hb_002903_070 0.1102975784 transcription factor TF Family: C2C2-Dof zinc finger protein, putative [Ricinus communis]
9 Hb_001518_020 0.1103866324 - - PREDICTED: F-box/LRR-repeat protein 13-like isoform X2 [Fragaria vesca subsp. vesca]
10 Hb_003428_110 0.1115545591 - - ARF2-B: ADP-ribosylation factor 2-B [Gossypium arboreum]
11 Hb_000771_140 0.1117463694 - - PREDICTED: abscisic acid receptor PYL8 [Jatropha curcas]
12 Hb_006551_010 0.1135255521 - - electron transporter, putative [Ricinus communis]
13 Hb_000805_090 0.1162299654 - - hypothetical protein POPTR_0009s03890g [Populus trichocarpa]
14 Hb_000481_010 0.1166206596 - - PREDICTED: F-box/kelch-repeat protein SKIP6 [Jatropha curcas]
15 Hb_114684_020 0.1177510981 - - beta-1,3-glucanase [Hevea brasiliensis]
16 Hb_002422_060 0.1196353048 desease resistance Gene Name: NB-ARC Disease resistance protein RGA2, putative [Ricinus communis]
17 Hb_000371_110 0.1205533591 - - -
18 Hb_000014_100 0.1225002963 - - -
19 Hb_000134_350 0.1226482809 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 8-like [Jatropha curcas]
20 Hb_007245_090 0.1233052822 - - -

Gene co-expression network

sample Hb_003747_240 Hb_003747_240 Hb_000809_040 Hb_000809_040 Hb_003747_240--Hb_000809_040 Hb_000163_290 Hb_000163_290 Hb_003747_240--Hb_000163_290 Hb_011174_070 Hb_011174_070 Hb_003747_240--Hb_011174_070 Hb_006499_010 Hb_006499_010 Hb_003747_240--Hb_006499_010 Hb_000138_040 Hb_000138_040 Hb_003747_240--Hb_000138_040 Hb_003404_030 Hb_003404_030 Hb_003747_240--Hb_003404_030 Hb_001366_220 Hb_001366_220 Hb_000809_040--Hb_001366_220 Hb_000313_380 Hb_000313_380 Hb_000809_040--Hb_000313_380 Hb_001981_090 Hb_001981_090 Hb_000809_040--Hb_001981_090 Hb_004882_020 Hb_004882_020 Hb_000809_040--Hb_004882_020 Hb_000085_310 Hb_000085_310 Hb_000809_040--Hb_000085_310 Hb_000771_140 Hb_000771_140 Hb_000809_040--Hb_000771_140 Hb_000163_290--Hb_006499_010 Hb_000117_040 Hb_000117_040 Hb_000163_290--Hb_000117_040 Hb_001518_020 Hb_001518_020 Hb_000163_290--Hb_001518_020 Hb_000371_110 Hb_000371_110 Hb_000163_290--Hb_000371_110 Hb_001186_060 Hb_001186_060 Hb_000163_290--Hb_001186_060 Hb_003057_120 Hb_003057_120 Hb_011174_070--Hb_003057_120 Hb_000427_030 Hb_000427_030 Hb_011174_070--Hb_000427_030 Hb_000387_080 Hb_000387_080 Hb_011174_070--Hb_000387_080 Hb_000057_060 Hb_000057_060 Hb_011174_070--Hb_000057_060 Hb_000805_090 Hb_000805_090 Hb_011174_070--Hb_000805_090 Hb_000025_480 Hb_000025_480 Hb_011174_070--Hb_000025_480 Hb_001930_070 Hb_001930_070 Hb_006499_010--Hb_001930_070 Hb_007245_090 Hb_007245_090 Hb_006499_010--Hb_007245_090 Hb_000033_050 Hb_000033_050 Hb_006499_010--Hb_000033_050 Hb_006499_010--Hb_001186_060 Hb_001817_180 Hb_001817_180 Hb_000138_040--Hb_001817_180 Hb_000358_080 Hb_000358_080 Hb_000138_040--Hb_000358_080 Hb_000134_350 Hb_000134_350 Hb_000138_040--Hb_000134_350 Hb_009382_020 Hb_009382_020 Hb_000138_040--Hb_009382_020 Hb_029281_010 Hb_029281_010 Hb_000138_040--Hb_029281_010 Hb_001274_020 Hb_001274_020 Hb_000138_040--Hb_001274_020 Hb_003404_030--Hb_000057_060 Hb_002506_010 Hb_002506_010 Hb_003404_030--Hb_002506_010 Hb_127979_010 Hb_127979_010 Hb_003404_030--Hb_127979_010 Hb_009510_030 Hb_009510_030 Hb_003404_030--Hb_009510_030 Hb_176022_020 Hb_176022_020 Hb_003404_030--Hb_176022_020 Hb_010174_130 Hb_010174_130 Hb_003404_030--Hb_010174_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.7594 3.32072 0.384012 1.09019 12.9001 8.50267
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.60904 6.49258 13.3494 2.57348 0.37758

CAGE analysis