Hb_003747_250

Information

Type -
Description -
Location Contig3747: 224198-230465
Sequence    

Annotation

kegg
ID pop:POPTR_0014s14180g
description POPTRDRAFT_572873; potassium transporter family protein
nr
ID XP_010921761.1
description PREDICTED: potassium transporter 7 isoform X2 [Elaeis guineensis]
swissprot
ID Q9LD18
description Potassium transporter 4 OS=Arabidopsis thaliana GN=POT4 PE=1 SV=2
trembl
ID A0A0E0AP26
description Uncharacterized protein OS=Oryza glumipatula PE=4 SV=1
Gene Ontology
ID GO:0016021
description k+ uptake transporter 3 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38238: 226374-227029 , PASA_asmbl_38239: 224192-230385 , PASA_asmbl_38240: 229322-229458
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003747_250 0.0 - - PREDICTED: potassium transporter 7 isoform X2 [Elaeis guineensis]
2 Hb_006120_210 0.0814445944 - - gibberellin 20-oxidase, putative [Ricinus communis]
3 Hb_008749_010 0.087991307 - - PREDICTED: auxin efflux carrier component 3-like [Jatropha curcas]
4 Hb_000742_130 0.0962304474 - - PREDICTED: probable receptor-like protein kinase At1g30570 [Jatropha curcas]
5 Hb_008806_040 0.0988882546 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]
6 Hb_004228_070 0.1016820815 - - PREDICTED: uncharacterized protein LOC103338699 [Prunus mume]
7 Hb_000365_430 0.1051315928 - - PREDICTED: BTB/POZ domain-containing protein At3g08570-like [Jatropha curcas]
8 Hb_001828_110 0.106893736 - - PREDICTED: lysine histidine transporter 1-like [Tarenaya hassleriana]
9 Hb_000163_180 0.1071972648 - - PREDICTED: UDP-glucuronic acid decarboxylase 2 [Jatropha curcas]
10 Hb_000098_260 0.1083609007 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
11 Hb_002490_060 0.1121112473 - - PREDICTED: uncharacterized protein LOC105638743 [Jatropha curcas]
12 Hb_002518_220 0.1140522189 - - PREDICTED: uncharacterized protein LOC105631001 isoform X2 [Jatropha curcas]
13 Hb_004634_030 0.1164494356 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003573_050 0.1170808559 - - ARF GTPase activator, putative [Ricinus communis]
15 Hb_002205_150 0.1175532263 - - RING-H2 finger protein ATL3C, putative [Ricinus communis]
16 Hb_006196_030 0.1200750318 - - PREDICTED: uncharacterized protein LOC105650679 [Jatropha curcas]
17 Hb_000247_140 0.1204391813 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT3 [Populus euphratica]
18 Hb_002639_050 0.1241353696 - - multicopper oxidase, putative [Ricinus communis]
19 Hb_092975_010 0.1252379207 - - hypothetical protein JCGZ_04359 [Jatropha curcas]
20 Hb_000010_440 0.1270328372 - - PREDICTED: peroxisome biogenesis factor 10-like [Jatropha curcas]

Gene co-expression network

sample Hb_003747_250 Hb_003747_250 Hb_006120_210 Hb_006120_210 Hb_003747_250--Hb_006120_210 Hb_008749_010 Hb_008749_010 Hb_003747_250--Hb_008749_010 Hb_000742_130 Hb_000742_130 Hb_003747_250--Hb_000742_130 Hb_008806_040 Hb_008806_040 Hb_003747_250--Hb_008806_040 Hb_004228_070 Hb_004228_070 Hb_003747_250--Hb_004228_070 Hb_000365_430 Hb_000365_430 Hb_003747_250--Hb_000365_430 Hb_006120_210--Hb_000742_130 Hb_000563_630 Hb_000563_630 Hb_006120_210--Hb_000563_630 Hb_002518_220 Hb_002518_220 Hb_006120_210--Hb_002518_220 Hb_002639_050 Hb_002639_050 Hb_006120_210--Hb_002639_050 Hb_001054_040 Hb_001054_040 Hb_006120_210--Hb_001054_040 Hb_000365_180 Hb_000365_180 Hb_008749_010--Hb_000365_180 Hb_000878_090 Hb_000878_090 Hb_008749_010--Hb_000878_090 Hb_000163_180 Hb_000163_180 Hb_008749_010--Hb_000163_180 Hb_008749_010--Hb_004228_070 Hb_001989_070 Hb_001989_070 Hb_008749_010--Hb_001989_070 Hb_000645_160 Hb_000645_160 Hb_000742_130--Hb_000645_160 Hb_000742_130--Hb_002518_220 Hb_000098_260 Hb_000098_260 Hb_000742_130--Hb_000098_260 Hb_092975_010 Hb_092975_010 Hb_000742_130--Hb_092975_010 Hb_000329_720 Hb_000329_720 Hb_000742_130--Hb_000329_720 Hb_138086_010 Hb_138086_010 Hb_008806_040--Hb_138086_010 Hb_070634_010 Hb_070634_010 Hb_008806_040--Hb_070634_010 Hb_009476_070 Hb_009476_070 Hb_008806_040--Hb_009476_070 Hb_002774_180 Hb_002774_180 Hb_008806_040--Hb_002774_180 Hb_001989_040 Hb_001989_040 Hb_008806_040--Hb_001989_040 Hb_021576_130 Hb_021576_130 Hb_004228_070--Hb_021576_130 Hb_002205_150 Hb_002205_150 Hb_004228_070--Hb_002205_150 Hb_003454_050 Hb_003454_050 Hb_004228_070--Hb_003454_050 Hb_007123_010 Hb_007123_010 Hb_004228_070--Hb_007123_010 Hb_044653_050 Hb_044653_050 Hb_004228_070--Hb_044653_050 Hb_006922_020 Hb_006922_020 Hb_004228_070--Hb_006922_020 Hb_003092_020 Hb_003092_020 Hb_000365_430--Hb_003092_020 Hb_009189_100 Hb_009189_100 Hb_000365_430--Hb_009189_100 Hb_001936_180 Hb_001936_180 Hb_000365_430--Hb_001936_180 Hb_007290_050 Hb_007290_050 Hb_000365_430--Hb_007290_050 Hb_000365_430--Hb_000098_260 Hb_000365_430--Hb_000329_720
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0852692 13.0668 24.9467 26.9484 0.0603181 0.035056
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.088342 0.152934 0.0265044 5.35532 7.94963

CAGE analysis