Hb_003750_050

Information

Type -
Description -
Location Contig3750: 23635-26457
Sequence    

Annotation

kegg
ID pop:POPTR_0017s02890g
description RNA and export factor-binding family protein
nr
ID XP_012086407.1
description PREDICTED: THO complex subunit 4D isoform X1 [Jatropha curcas]
swissprot
ID Q6NQ72
description THO complex subunit 4D OS=Arabidopsis thaliana GN=ALY4 PE=1 SV=1
trembl
ID A0A067K1W6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22501 PE=4 SV=1
Gene Ontology
ID GO:0097159
description rna and export factor-binding family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38281: 23837-27547 , PASA_asmbl_38282: 20965-27544
cDNA
(Sanger)
(ID:Location)		 041_N08.ab1: 25012-27544

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003750_050 0.0 - - PREDICTED: THO complex subunit 4D isoform X1 [Jatropha curcas]
2 Hb_000156_010 0.0475678706 - - phospho-n-acetylmuramoyl-pentapeptide-transferase, putative [Ricinus communis]
3 Hb_000120_670 0.0517376384 - - PREDICTED: SRSF protein kinase 2-like [Jatropha curcas]
4 Hb_001279_150 0.0541217688 - - PREDICTED: ATP synthase mitochondrial F1 complex assembly factor 2 [Jatropha curcas]
5 Hb_002811_180 0.0558327415 - - conserved hypothetical protein [Ricinus communis]
6 Hb_011037_030 0.0573109144 - - PREDICTED: uncharacterized protein LOC105641407 [Jatropha curcas]
7 Hb_054865_150 0.0600701539 - - PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Jatropha curcas]
8 Hb_006455_120 0.0625918443 - - n6-DNA-methyltransferase, putative [Ricinus communis]
9 Hb_000260_330 0.0649960436 - - PREDICTED: uncharacterized protein LOC103438625 [Malus domestica]
10 Hb_000923_010 0.0671321701 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X1 [Jatropha curcas]
11 Hb_000025_180 0.0671506622 - - hypothetical protein CISIN_1g024241mg [Citrus sinensis]
12 Hb_010964_040 0.0676068171 - - Eukaryotic initiation factor 4A-3 [Gossypium arboreum]
13 Hb_008847_030 0.068067118 - - PREDICTED: TLD domain-containing protein 1 [Jatropha curcas]
14 Hb_012498_010 0.069038851 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM44-2 [Jatropha curcas]
15 Hb_000345_240 0.0701142635 - - PREDICTED: cyclin-H1-1 [Jatropha curcas]
16 Hb_003964_070 0.0711735012 - - hypothetical protein JCGZ_15695 [Jatropha curcas]
17 Hb_000594_050 0.072742461 - - PREDICTED: pH-response regulator protein palA/RIM20 isoform X1 [Jatropha curcas]
18 Hb_001584_120 0.0729077446 - - PREDICTED: probable Xaa-Pro aminopeptidase 3 [Jatropha curcas]
19 Hb_000603_150 0.0732362137 - - PREDICTED: guanine nucleotide-binding protein alpha-1 subunit [Jatropha curcas]
20 Hb_007390_010 0.0737102724 - - catalytic, putative [Ricinus communis]

Gene co-expression network

sample Hb_003750_050 Hb_003750_050 Hb_000156_010 Hb_000156_010 Hb_003750_050--Hb_000156_010 Hb_000120_670 Hb_000120_670 Hb_003750_050--Hb_000120_670 Hb_001279_150 Hb_001279_150 Hb_003750_050--Hb_001279_150 Hb_002811_180 Hb_002811_180 Hb_003750_050--Hb_002811_180 Hb_011037_030 Hb_011037_030 Hb_003750_050--Hb_011037_030 Hb_054865_150 Hb_054865_150 Hb_003750_050--Hb_054865_150 Hb_000156_010--Hb_011037_030 Hb_000156_010--Hb_054865_150 Hb_012498_010 Hb_012498_010 Hb_000156_010--Hb_012498_010 Hb_105328_020 Hb_105328_020 Hb_000156_010--Hb_105328_020 Hb_005291_050 Hb_005291_050 Hb_000156_010--Hb_005291_050 Hb_000580_180 Hb_000580_180 Hb_000120_670--Hb_000580_180 Hb_003964_070 Hb_003964_070 Hb_000120_670--Hb_003964_070 Hb_000019_030 Hb_000019_030 Hb_000120_670--Hb_000019_030 Hb_000120_670--Hb_001279_150 Hb_000345_240 Hb_000345_240 Hb_000120_670--Hb_000345_240 Hb_000215_110 Hb_000215_110 Hb_001279_150--Hb_000215_110 Hb_005489_060 Hb_005489_060 Hb_001279_150--Hb_005489_060 Hb_007017_030 Hb_007017_030 Hb_001279_150--Hb_007017_030 Hb_002182_080 Hb_002182_080 Hb_001279_150--Hb_002182_080 Hb_000260_330 Hb_000260_330 Hb_002811_180--Hb_000260_330 Hb_000621_010 Hb_000621_010 Hb_002811_180--Hb_000621_010 Hb_008847_030 Hb_008847_030 Hb_002811_180--Hb_008847_030 Hb_000392_430 Hb_000392_430 Hb_002811_180--Hb_000392_430 Hb_000111_320 Hb_000111_320 Hb_002811_180--Hb_000111_320 Hb_006455_120 Hb_006455_120 Hb_011037_030--Hb_006455_120 Hb_011037_030--Hb_054865_150 Hb_000345_380 Hb_000345_380 Hb_011037_030--Hb_000345_380 Hb_011037_030--Hb_105328_020 Hb_000172_290 Hb_000172_290 Hb_054865_150--Hb_000172_290 Hb_000254_090 Hb_000254_090 Hb_054865_150--Hb_000254_090 Hb_000318_290 Hb_000318_290 Hb_054865_150--Hb_000318_290 Hb_002110_190 Hb_002110_190 Hb_054865_150--Hb_002110_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.4868 18.7964 20.8778 33.8614 24.7463 37.5079
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.9828 31.8164 26.5543 28.0776 20.6316

CAGE analysis