Hb_003750_080

Information

Type -
Description -
Location Contig3750: 41698-71542
Sequence    

Annotation

kegg
ID pop:POPTR_0004s08580g
description POPTRDRAFT_1075741; hypothetical protein
nr
ID XP_012077823.1
description PREDICTED: DNA repair protein complementing XP-C cells homolog [Jatropha curcas]
swissprot
ID P51612
description DNA repair protein complementing XP-C cells homolog OS=Mus musculus GN=Xpc PE=1 SV=2
trembl
ID A0A067KN18
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13449 PE=4 SV=1
Gene Ontology
ID GO:0005634
description dna repair protein complementing xp-c cells homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38286: 42161-42426 , PASA_asmbl_38287: 43955-64687 , PASA_asmbl_38288: 64703-64990 , PASA_asmbl_38289: 68780-71522
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003750_080 0.0 - - PREDICTED: DNA repair protein complementing XP-C cells homolog [Jatropha curcas]
2 Hb_010710_010 0.0722325895 - - pumilio/Puf RNA-binding domain-containing family protein [Populus trichocarpa]
3 Hb_000291_110 0.0770734874 - - eukaryotic translation initiation factor [Hevea brasiliensis]
4 Hb_000413_180 0.0791629517 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
5 Hb_000230_080 0.0826285194 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
6 Hb_001584_160 0.0844248353 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g56570 [Jatropha curcas]
7 Hb_000062_240 0.0890590688 - - PREDICTED: signal recognition particle subunit SRP72 [Jatropha curcas]
8 Hb_001226_020 0.0914293335 - - PREDICTED: pentatricopeptide repeat-containing protein At1g05670, mitochondrial-like [Jatropha curcas]
9 Hb_001789_090 0.0929368056 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105648450 [Jatropha curcas]
10 Hb_010175_020 0.0931822597 - - PREDICTED: cysteine desulfurase, mitochondrial isoform X1 [Jatropha curcas]
11 Hb_000635_220 0.0941917643 - - PREDICTED: F-box protein At1g67340 [Jatropha curcas]
12 Hb_005147_090 0.0947201458 - - PREDICTED: KH domain-containing protein At1g09660/At1g09670 isoform X1 [Jatropha curcas]
13 Hb_001266_060 0.0954429079 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g47840 [Jatropha curcas]
14 Hb_000152_820 0.0955143534 - - PREDICTED: pentatricopeptide repeat-containing protein At5g64320, mitochondrial [Jatropha curcas]
15 Hb_000427_050 0.0963442136 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
16 Hb_001720_050 0.0966417656 - - PREDICTED: ATPase family AAA domain-containing protein At1g05910 isoform X1 [Jatropha curcas]
17 Hb_008103_120 0.1004404567 - - hypothetical protein CISIN_1g009650mg [Citrus sinensis]
18 Hb_000386_030 0.1010508823 - - PREDICTED: uncharacterized protein LOC105629270 [Jatropha curcas]
19 Hb_001269_550 0.1011357596 - - hypothetical protein POPTR_0001s03510g [Populus trichocarpa]
20 Hb_002307_100 0.1019768993 - - PREDICTED: protein transport protein sec23-1 [Jatropha curcas]

Gene co-expression network

sample Hb_003750_080 Hb_003750_080 Hb_010710_010 Hb_010710_010 Hb_003750_080--Hb_010710_010 Hb_000291_110 Hb_000291_110 Hb_003750_080--Hb_000291_110 Hb_000413_180 Hb_000413_180 Hb_003750_080--Hb_000413_180 Hb_000230_080 Hb_000230_080 Hb_003750_080--Hb_000230_080 Hb_001584_160 Hb_001584_160 Hb_003750_080--Hb_001584_160 Hb_000062_240 Hb_000062_240 Hb_003750_080--Hb_000062_240 Hb_010710_010--Hb_000230_080 Hb_010710_010--Hb_000413_180 Hb_002307_100 Hb_002307_100 Hb_010710_010--Hb_002307_100 Hb_000152_820 Hb_000152_820 Hb_010710_010--Hb_000152_820 Hb_001720_050 Hb_001720_050 Hb_010710_010--Hb_001720_050 Hb_000291_110--Hb_000062_240 Hb_001789_090 Hb_001789_090 Hb_000291_110--Hb_001789_090 Hb_181235_010 Hb_181235_010 Hb_000291_110--Hb_181235_010 Hb_004837_040 Hb_004837_040 Hb_000291_110--Hb_004837_040 Hb_000061_420 Hb_000061_420 Hb_000291_110--Hb_000061_420 Hb_000413_180--Hb_000230_080 Hb_010175_020 Hb_010175_020 Hb_000413_180--Hb_010175_020 Hb_000413_180--Hb_000152_820 Hb_000386_030 Hb_000386_030 Hb_000413_180--Hb_000386_030 Hb_000207_390 Hb_000207_390 Hb_000230_080--Hb_000207_390 Hb_000230_080--Hb_002307_100 Hb_000390_070 Hb_000390_070 Hb_000230_080--Hb_000390_070 Hb_001584_160--Hb_000386_030 Hb_031042_020 Hb_031042_020 Hb_001584_160--Hb_031042_020 Hb_002986_130 Hb_002986_130 Hb_001584_160--Hb_002986_130 Hb_001584_160--Hb_010175_020 Hb_001584_160--Hb_000413_180 Hb_000062_240--Hb_004837_040 Hb_000062_240--Hb_001789_090 Hb_002811_360 Hb_002811_360 Hb_000062_240--Hb_002811_360 Hb_000418_100 Hb_000418_100 Hb_000062_240--Hb_000418_100 Hb_015306_020 Hb_015306_020 Hb_000062_240--Hb_015306_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.7805 18.0499 4.04047 5.68426 24.5918 30.9116
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.4342 17.2901 39.533 18.6353 5.20574

CAGE analysis