Hb_003750_130

Information

Type -
Description -
Location Contig3750: 90070-99773
Sequence    

Annotation

kegg
ID rcu:RCOM_0012660
description hypothetical protein
nr
ID XP_002531181.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SYW2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0012660 PE=4 SV=1
Gene Ontology
ID GO:0044237
description senescence-associated family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38294: 95092-97624 , PASA_asmbl_38297: 98794-99159
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003750_130 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000170_160 0.1024486366 - - PREDICTED: NAD kinase 2, chloroplastic [Jatropha curcas]
3 Hb_001277_340 0.1135565917 - - aldo/keto reductase, putative [Ricinus communis]
4 Hb_000673_010 0.1155034033 - - PREDICTED: uncharacterized protein LOC105636554 isoform X1 [Jatropha curcas]
5 Hb_001766_070 0.1259583944 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001828_120 0.1326000227 - - PREDICTED: uncharacterized protein LOC105140167 [Populus euphratica]
7 Hb_000008_280 0.1329238593 - - PREDICTED: double-stranded RNA-binding protein 2 [Jatropha curcas]
8 Hb_007576_070 0.13317586 - - PREDICTED: uncharacterized protein LOC105640040 isoform X3 [Jatropha curcas]
9 Hb_003734_080 0.1335705326 - - myosin vIII, putative [Ricinus communis]
10 Hb_000529_130 0.1338316681 - - hypothetical protein POPTR_0007s14320g [Populus trichocarpa]
11 Hb_005235_070 0.1373546117 - - PREDICTED: plastid lipid-associated protein 3, chloroplastic [Jatropha curcas]
12 Hb_004994_350 0.1374109713 - - PREDICTED: UPF0187 protein At3g61320, chloroplastic [Jatropha curcas]
13 Hb_002600_070 0.1391281192 transcription factor TF Family: TAZ PREDICTED: histone acetyltransferase HAC12 [Jatropha curcas]
14 Hb_000482_050 0.1403893398 - - PREDICTED: UDP-sulfoquinovose synthase, chloroplastic [Jatropha curcas]
15 Hb_001430_020 0.1404048123 - - Actin-like ATPase superfamily protein isoform 1 [Theobroma cacao]
16 Hb_000609_110 0.1407758118 - - PREDICTED: methyl-CpG-binding domain-containing protein 11-like [Jatropha curcas]
17 Hb_002249_030 0.1409913932 - - PREDICTED: chaperone protein ClpC, chloroplastic [Jatropha curcas]
18 Hb_102948_010 0.141819748 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 5 isoform X2 [Jatropha curcas]
19 Hb_000155_170 0.1423615508 transcription factor TF Family: VOZ hypothetical protein EUTSA_v10007498mg [Eutrema salsugineum]
20 Hb_001160_100 0.1425924016 - - PREDICTED: probable plastid-lipid-associated protein 6, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_003750_130 Hb_003750_130 Hb_000170_160 Hb_000170_160 Hb_003750_130--Hb_000170_160 Hb_001277_340 Hb_001277_340 Hb_003750_130--Hb_001277_340 Hb_000673_010 Hb_000673_010 Hb_003750_130--Hb_000673_010 Hb_001766_070 Hb_001766_070 Hb_003750_130--Hb_001766_070 Hb_001828_120 Hb_001828_120 Hb_003750_130--Hb_001828_120 Hb_000008_280 Hb_000008_280 Hb_003750_130--Hb_000008_280 Hb_013405_180 Hb_013405_180 Hb_000170_160--Hb_013405_180 Hb_000170_160--Hb_000008_280 Hb_001998_210 Hb_001998_210 Hb_000170_160--Hb_001998_210 Hb_021079_020 Hb_021079_020 Hb_000170_160--Hb_021079_020 Hb_000170_160--Hb_000673_010 Hb_000562_070 Hb_000562_070 Hb_001277_340--Hb_000562_070 Hb_002600_070 Hb_002600_070 Hb_001277_340--Hb_002600_070 Hb_009158_060 Hb_009158_060 Hb_001277_340--Hb_009158_060 Hb_005305_130 Hb_005305_130 Hb_001277_340--Hb_005305_130 Hb_000155_170 Hb_000155_170 Hb_001277_340--Hb_000155_170 Hb_003925_060 Hb_003925_060 Hb_001277_340--Hb_003925_060 Hb_000673_010--Hb_001766_070 Hb_008120_040 Hb_008120_040 Hb_000673_010--Hb_008120_040 Hb_005235_070 Hb_005235_070 Hb_000673_010--Hb_005235_070 Hb_000137_010 Hb_000137_010 Hb_000673_010--Hb_000137_010 Hb_000603_190 Hb_000603_190 Hb_000673_010--Hb_000603_190 Hb_001409_060 Hb_001409_060 Hb_000673_010--Hb_001409_060 Hb_000787_080 Hb_000787_080 Hb_001766_070--Hb_000787_080 Hb_001766_070--Hb_000137_010 Hb_000270_600 Hb_000270_600 Hb_001766_070--Hb_000270_600 Hb_001766_070--Hb_001409_060 Hb_001766_070--Hb_008120_040 Hb_003529_140 Hb_003529_140 Hb_001828_120--Hb_003529_140 Hb_000771_170 Hb_000771_170 Hb_001828_120--Hb_000771_170 Hb_005883_020 Hb_005883_020 Hb_001828_120--Hb_005883_020 Hb_001828_120--Hb_002600_070 Hb_007192_090 Hb_007192_090 Hb_001828_120--Hb_007192_090 Hb_002249_030 Hb_002249_030 Hb_001828_120--Hb_002249_030 Hb_008642_060 Hb_008642_060 Hb_000008_280--Hb_008642_060 Hb_000008_280--Hb_013405_180 Hb_000300_030 Hb_000300_030 Hb_000008_280--Hb_000300_030 Hb_000358_220 Hb_000358_220 Hb_000008_280--Hb_000358_220 Hb_000179_190 Hb_000179_190 Hb_000008_280--Hb_000179_190 Hb_011457_140 Hb_011457_140 Hb_000008_280--Hb_011457_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.1303 73.7875 76.2954 43.5167 20.9444 17.8176
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.1191 12.4226 11.7341 10.4093 91.726

CAGE analysis