Hb_003751_060

Information

Type -
Description -
Location Contig3751: 45599-49859
Sequence    

Annotation

kegg
ID pop:POPTR_0004s17980g
description POPTRDRAFT_818188; EARLY-RESPONSIVE TO DEHYDRATION 7 family protein
nr
ID XP_002305512.1
description EARLY-RESPONSIVE TO DEHYDRATION 7 family protein [Populus trichocarpa]
swissprot
ID Q8R1X6
description Spartin OS=Mus musculus GN=Spg20 PE=1 SV=1
trembl
ID B9H186
description EARLY-RESPONSIVE TO DEHYDRATION 7 family protein OS=Populus trichocarpa GN=POPTR_0004s17980g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38299: 45499-49858 , PASA_asmbl_38300: 45711-49858 , PASA_asmbl_38304: 47442-47548 , PASA_asmbl_38305: 47731-47853 , PASA_asmbl_38310: 45660-111720
cDNA
(Sanger)
(ID:Location)		 001_B01.ab1: 49059-49847 , 004_C11.ab1: 49064-49832 , 041_H06.ab1: 49262-49858

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003751_060 0.0 - - EARLY-RESPONSIVE TO DEHYDRATION 7 family protein [Populus trichocarpa]
2 Hb_004512_020 0.1183884752 - - PREDICTED: tetratricopeptide repeat protein 1 [Jatropha curcas]
3 Hb_035947_010 0.1297384431 - - PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Elaeis guineensis]
4 Hb_001754_240 0.1326053234 - - PREDICTED: mitochondrial thiamine pyrophosphate carrier isoform X1 [Jatropha curcas]
5 Hb_003097_190 0.1350477859 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 3 [Jatropha curcas]
6 Hb_000933_150 0.1359464837 - - PREDICTED: mitotic checkpoint protein BUB3.3 isoform X1 [Jatropha curcas]
7 Hb_002387_020 0.1370198722 - - PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Elaeis guineensis]
8 Hb_001341_040 0.1391289555 - - hypothetical protein JCGZ_05578 [Jatropha curcas]
9 Hb_000768_030 0.1408253763 - - PREDICTED: ELMO domain-containing protein A isoform X1 [Jatropha curcas]
10 Hb_000406_040 0.14156546 - - PREDICTED: LOW QUALITY PROTEIN: FRIGIDA-like protein 5 [Jatropha curcas]
11 Hb_001083_030 0.1435722288 - - PREDICTED: probable E3 ubiquitin ligase complex SCF subunit sconB [Jatropha curcas]
12 Hb_000477_030 0.1443532872 - - PREDICTED: boron transporter 4-like [Jatropha curcas]
13 Hb_001427_170 0.1469507013 - - PREDICTED: 40S ribosomal protein S15a-5-like [Populus euphratica]
14 Hb_031527_100 0.1505688569 - - conserved hypothetical protein [Ricinus communis]
15 Hb_023001_020 0.1521675819 - - PREDICTED: mitochondrial succinate-fumarate transporter 1 [Jatropha curcas]
16 Hb_004678_020 0.152710459 - - PREDICTED: protein YIF1B [Jatropha curcas]
17 Hb_004241_070 0.1539641667 - - PREDICTED: WD repeat-containing protein 25 [Jatropha curcas]
18 Hb_012132_030 0.1540459659 - - PREDICTED: RNA polymerase-associated protein CTR9 homolog [Jatropha curcas]
19 Hb_001541_260 0.1542219085 - - PREDICTED: protein MAK16 homolog [Jatropha curcas]
20 Hb_005505_050 0.158002637 - - PREDICTED: uncharacterized protein LOC105639309 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_003751_060 Hb_003751_060 Hb_004512_020 Hb_004512_020 Hb_003751_060--Hb_004512_020 Hb_035947_010 Hb_035947_010 Hb_003751_060--Hb_035947_010 Hb_001754_240 Hb_001754_240 Hb_003751_060--Hb_001754_240 Hb_003097_190 Hb_003097_190 Hb_003751_060--Hb_003097_190 Hb_000933_150 Hb_000933_150 Hb_003751_060--Hb_000933_150 Hb_002387_020 Hb_002387_020 Hb_003751_060--Hb_002387_020 Hb_001427_170 Hb_001427_170 Hb_004512_020--Hb_001427_170 Hb_012132_030 Hb_012132_030 Hb_004512_020--Hb_012132_030 Hb_000946_120 Hb_000946_120 Hb_004512_020--Hb_000946_120 Hb_031527_100 Hb_031527_100 Hb_004512_020--Hb_031527_100 Hb_000365_140 Hb_000365_140 Hb_004512_020--Hb_000365_140 Hb_000422_140 Hb_000422_140 Hb_004512_020--Hb_000422_140 Hb_003327_030 Hb_003327_030 Hb_035947_010--Hb_003327_030 Hb_097433_010 Hb_097433_010 Hb_035947_010--Hb_097433_010 Hb_002918_310 Hb_002918_310 Hb_035947_010--Hb_002918_310 Hb_001083_030 Hb_001083_030 Hb_035947_010--Hb_001083_030 Hb_035947_010--Hb_002387_020 Hb_003091_010 Hb_003091_010 Hb_001754_240--Hb_003091_010 Hb_006623_020 Hb_006623_020 Hb_001754_240--Hb_006623_020 Hb_004701_030 Hb_004701_030 Hb_001754_240--Hb_004701_030 Hb_000617_220 Hb_000617_220 Hb_001754_240--Hb_000617_220 Hb_000923_040 Hb_000923_040 Hb_001754_240--Hb_000923_040 Hb_004656_060 Hb_004656_060 Hb_001754_240--Hb_004656_060 Hb_010068_030 Hb_010068_030 Hb_003097_190--Hb_010068_030 Hb_012654_010 Hb_012654_010 Hb_003097_190--Hb_012654_010 Hb_000152_560 Hb_000152_560 Hb_003097_190--Hb_000152_560 Hb_001057_010 Hb_001057_010 Hb_003097_190--Hb_001057_010 Hb_002890_030 Hb_002890_030 Hb_003097_190--Hb_002890_030 Hb_000861_070 Hb_000861_070 Hb_003097_190--Hb_000861_070 Hb_008887_050 Hb_008887_050 Hb_000933_150--Hb_008887_050 Hb_000676_050 Hb_000676_050 Hb_000933_150--Hb_000676_050 Hb_006096_040 Hb_006096_040 Hb_000933_150--Hb_006096_040 Hb_001484_060 Hb_001484_060 Hb_000933_150--Hb_001484_060 Hb_010968_010 Hb_010968_010 Hb_000933_150--Hb_010968_010 Hb_000933_150--Hb_031527_100 Hb_001452_140 Hb_001452_140 Hb_002387_020--Hb_001452_140 Hb_000406_040 Hb_000406_040 Hb_002387_020--Hb_000406_040 Hb_000487_100 Hb_000487_100 Hb_002387_020--Hb_000487_100 Hb_003878_120 Hb_003878_120 Hb_002387_020--Hb_003878_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
312.065 194.33 207.019 71.1481 798.603 228.61
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
279.527 179.411 255.564 79.7586 38.3152

CAGE analysis