Hb_003751_110

Information

Type -
Description -
Location Contig3751: 108176-113039
Sequence    

Annotation

kegg
ID cam:101511898
description uncharacterized LOC101511898
nr
ID AFK37068.1
description unknown [Lotus japonicus]
swissprot
ID -
description -
trembl
ID I3S9X6
description Uncharacterized protein OS=Lotus japonicus PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38301: 108248-112576 , PASA_asmbl_38307: 111068-111760 , PASA_asmbl_38310: 45660-111720
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003751_110 0.0 - - unknown [Lotus japonicus]
2 Hb_003893_170 0.1285829863 - - hypothetical protein JCGZ_26423 [Jatropha curcas]
3 Hb_015456_020 0.1554929816 - - -
4 Hb_001452_140 0.1576705961 - - PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Elaeis guineensis]
5 Hb_010931_110 0.1589445686 - - ubiquitin-protein ligase, putative [Ricinus communis]
6 Hb_001341_040 0.1603996329 - - hypothetical protein JCGZ_05578 [Jatropha curcas]
7 Hb_004032_240 0.1635291338 - - electron transporter, putative [Ricinus communis]
8 Hb_004970_200 0.1653151216 - - serine/threonine-protein kinase, putative [Ricinus communis]
9 Hb_000733_060 0.1724133297 - - PREDICTED: protein GUCD1 isoform X1 [Jatropha curcas]
10 Hb_001001_160 0.1734559656 - - Phosphatidic acid phosphohydrolase 2 isoform 1 [Theobroma cacao]
11 Hb_002659_140 0.1759989028 - - hypothetical protein JCGZ_08031 [Jatropha curcas]
12 Hb_006452_060 0.1783134437 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
13 Hb_002973_080 0.1806583917 - - PREDICTED: uncharacterized protein LOC105630313 [Jatropha curcas]
14 Hb_000014_100 0.181349481 - - -
15 Hb_001198_090 0.182120008 - - PREDICTED: uncharacterized protein LOC105633343 [Jatropha curcas]
16 Hb_006816_290 0.1833079787 - - PREDICTED: uncharacterized protein LOC105647449 [Jatropha curcas]
17 Hb_000327_210 0.1854957564 - - -
18 Hb_005333_040 0.1860260882 - - PREDICTED: dnaJ homolog subfamily C member 5 [Prunus mume]
19 Hb_005657_010 0.1866441928 - - -
20 Hb_004226_020 0.1889442398 - - -

Gene co-expression network

sample Hb_003751_110 Hb_003751_110 Hb_003893_170 Hb_003893_170 Hb_003751_110--Hb_003893_170 Hb_015456_020 Hb_015456_020 Hb_003751_110--Hb_015456_020 Hb_001452_140 Hb_001452_140 Hb_003751_110--Hb_001452_140 Hb_010931_110 Hb_010931_110 Hb_003751_110--Hb_010931_110 Hb_001341_040 Hb_001341_040 Hb_003751_110--Hb_001341_040 Hb_004032_240 Hb_004032_240 Hb_003751_110--Hb_004032_240 Hb_008453_060 Hb_008453_060 Hb_003893_170--Hb_008453_060 Hb_003893_170--Hb_004032_240 Hb_001439_120 Hb_001439_120 Hb_003893_170--Hb_001439_120 Hb_000733_060 Hb_000733_060 Hb_003893_170--Hb_000733_060 Hb_008453_020 Hb_008453_020 Hb_003893_170--Hb_008453_020 Hb_000300_380 Hb_000300_380 Hb_015456_020--Hb_000300_380 Hb_005333_040 Hb_005333_040 Hb_015456_020--Hb_005333_040 Hb_001158_030 Hb_001158_030 Hb_015456_020--Hb_001158_030 Hb_004204_190 Hb_004204_190 Hb_015456_020--Hb_004204_190 Hb_000183_070 Hb_000183_070 Hb_015456_020--Hb_000183_070 Hb_000014_100 Hb_000014_100 Hb_015456_020--Hb_000014_100 Hb_002387_020 Hb_002387_020 Hb_001452_140--Hb_002387_020 Hb_019973_030 Hb_019973_030 Hb_001452_140--Hb_019973_030 Hb_004226_020 Hb_004226_020 Hb_001452_140--Hb_004226_020 Hb_001584_310 Hb_001584_310 Hb_001452_140--Hb_001584_310 Hb_096962_020 Hb_096962_020 Hb_001452_140--Hb_096962_020 Hb_130177_010 Hb_130177_010 Hb_010931_110--Hb_130177_010 Hb_001198_090 Hb_001198_090 Hb_010931_110--Hb_001198_090 Hb_143629_050 Hb_143629_050 Hb_010931_110--Hb_143629_050 Hb_010931_110--Hb_004032_240 Hb_000987_050 Hb_000987_050 Hb_010931_110--Hb_000987_050 Hb_053543_010 Hb_053543_010 Hb_010931_110--Hb_053543_010 Hb_011344_010 Hb_011344_010 Hb_001341_040--Hb_011344_010 Hb_001341_040--Hb_000733_060 Hb_000768_030 Hb_000768_030 Hb_001341_040--Hb_000768_030 Hb_000161_030 Hb_000161_030 Hb_001341_040--Hb_000161_030 Hb_006029_010 Hb_006029_010 Hb_001341_040--Hb_006029_010 Hb_002997_100 Hb_002997_100 Hb_001341_040--Hb_002997_100 Hb_000958_010 Hb_000958_010 Hb_004032_240--Hb_000958_010 Hb_004032_240--Hb_008453_020 Hb_019153_040 Hb_019153_040 Hb_004032_240--Hb_019153_040 Hb_186982_030 Hb_186982_030 Hb_004032_240--Hb_186982_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
231.609 28.6457 53.5415 27.4832 582.874 120.337
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
340.192 113.175 248.252 45.6107 23.5903

CAGE analysis