Hb_003752_070

Information

Type -
Description -
Location Contig3752: 83253-88225
Sequence    

Annotation

kegg
ID rcu:RCOM_1628240
description Hemolysin A, putative
nr
ID XP_012084548.1
description PREDICTED: uncharacterized protein LOC105643912 isoform X1 [Jatropha curcas]
swissprot
ID P19672
description Putative rRNA methyltransferase YqxC OS=Bacillus subtilis (strain 168) GN=yqxC PE=3 SV=3
trembl
ID A0A067LLJ4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15074 PE=4 SV=1
Gene Ontology
ID GO:0003723
description bacterial hemolysin-related isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38321: 83356-88088
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003752_070 0.0 - - PREDICTED: uncharacterized protein LOC105643912 isoform X1 [Jatropha curcas]
2 Hb_021650_010 0.0636146832 - - hypothetical protein JCGZ_09648 [Jatropha curcas]
3 Hb_001195_270 0.0697165281 - - PREDICTED: 5'-nucleotidase domain-containing protein 4 isoform X1 [Jatropha curcas]
4 Hb_006787_090 0.0730566657 - - PREDICTED: uncharacterized protein LOC105646282 [Jatropha curcas]
5 Hb_005162_110 0.0759709477 - - PREDICTED: uncharacterized protein LOC105648430 [Jatropha curcas]
6 Hb_000051_060 0.0799928377 - - conserved hypothetical protein [Ricinus communis]
7 Hb_010174_090 0.0818435035 - - PREDICTED: ALBINO3-like protein 1, chloroplastic [Jatropha curcas]
8 Hb_001935_100 0.0827581141 - - structural molecule, putative [Ricinus communis]
9 Hb_000703_290 0.0863996495 - - aldo/keto reductase, putative [Ricinus communis]
10 Hb_000663_020 0.0864866235 - - PREDICTED: alternative NAD(P)H-ubiquinone oxidoreductase C1, chloroplastic/mitochondrial isoform X1 [Jatropha curcas]
11 Hb_005389_170 0.0892834361 - - PREDICTED: probable lactoylglutathione lyase, chloroplast isoform X1 [Jatropha curcas]
12 Hb_000284_130 0.0899032169 - - sodium-bile acid cotransporter, putative [Ricinus communis]
13 Hb_000311_120 0.0917065971 - - PREDICTED: NADPH-dependent thioredoxin reductase 3 [Populus euphratica]
14 Hb_001660_120 0.0921520131 - - PREDICTED: adenylate kinase, chloroplastic [Jatropha curcas]
15 Hb_000826_030 0.093027175 - - PREDICTED: putative tRNA pseudouridine synthase isoform X1 [Jatropha curcas]
16 Hb_000640_160 0.0942593868 - - ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis]
17 Hb_000613_120 0.0954132333 transcription factor TF Family: SET PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic [Jatropha curcas]
18 Hb_006569_040 0.0970135439 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105650906 [Jatropha curcas]
19 Hb_004994_080 0.0971785119 - - PREDICTED: cell division protein FtsY homolog, chloroplastic isoform X1 [Jatropha curcas]
20 Hb_001541_050 0.0979609342 - - PREDICTED: serine/threonine-protein kinase AFC2-like [Jatropha curcas]

Gene co-expression network

sample Hb_003752_070 Hb_003752_070 Hb_021650_010 Hb_021650_010 Hb_003752_070--Hb_021650_010 Hb_001195_270 Hb_001195_270 Hb_003752_070--Hb_001195_270 Hb_006787_090 Hb_006787_090 Hb_003752_070--Hb_006787_090 Hb_005162_110 Hb_005162_110 Hb_003752_070--Hb_005162_110 Hb_000051_060 Hb_000051_060 Hb_003752_070--Hb_000051_060 Hb_010174_090 Hb_010174_090 Hb_003752_070--Hb_010174_090 Hb_021650_010--Hb_005162_110 Hb_001232_150 Hb_001232_150 Hb_021650_010--Hb_001232_150 Hb_021650_010--Hb_000051_060 Hb_000802_130 Hb_000802_130 Hb_021650_010--Hb_000802_130 Hb_021650_010--Hb_001195_270 Hb_000663_020 Hb_000663_020 Hb_001195_270--Hb_000663_020 Hb_005731_110 Hb_005731_110 Hb_001195_270--Hb_005731_110 Hb_001195_270--Hb_005162_110 Hb_001195_270--Hb_000051_060 Hb_000311_120 Hb_000311_120 Hb_006787_090--Hb_000311_120 Hb_006787_090--Hb_010174_090 Hb_000284_130 Hb_000284_130 Hb_006787_090--Hb_000284_130 Hb_000613_120 Hb_000613_120 Hb_006787_090--Hb_000613_120 Hb_000144_060 Hb_000144_060 Hb_006787_090--Hb_000144_060 Hb_005946_040 Hb_005946_040 Hb_005162_110--Hb_005946_040 Hb_000003_170 Hb_000003_170 Hb_005162_110--Hb_000003_170 Hb_005162_110--Hb_005731_110 Hb_005162_110--Hb_000051_060 Hb_001935_100 Hb_001935_100 Hb_000051_060--Hb_001935_100 Hb_002876_220 Hb_002876_220 Hb_000051_060--Hb_002876_220 Hb_000051_060--Hb_001232_150 Hb_010174_090--Hb_000311_120 Hb_010174_090--Hb_000613_120 Hb_003529_140 Hb_003529_140 Hb_010174_090--Hb_003529_140 Hb_006569_040 Hb_006569_040 Hb_010174_090--Hb_006569_040 Hb_000826_030 Hb_000826_030 Hb_010174_090--Hb_000826_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.14999 4.02472 14.3286 5.48479 6.06117 5.27178
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.30761 4.88497 2.34989 2.97778 12.7375

CAGE analysis