Hb_003752_100

Information

Type -
Description -
Location Contig3752: 103693-108312
Sequence    

Annotation

kegg
ID rcu:RCOM_1628380
description hypothetical protein
nr
ID XP_012084486.1
description PREDICTED: FRIGIDA-like protein 3 [Jatropha curcas]
swissprot
ID Q67ZB3
description FRIGIDA-like protein 3 OS=Arabidopsis thaliana GN=FRL3 PE=1 SV=1
trembl
ID A0A067LKK9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15070 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38327: 104014-108403 , PASA_asmbl_38328: 104513-104991
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003752_100 0.0 - - PREDICTED: FRIGIDA-like protein 3 [Jatropha curcas]
2 Hb_003082_010 0.0791318999 - - PREDICTED: putative F-box protein At3g10240 [Jatropha curcas]
3 Hb_004109_030 0.0793620563 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001864_060 0.0809527576 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
5 Hb_003175_030 0.084771981 - - PREDICTED: UBA and UBX domain-containing protein At4g15410-like [Populus euphratica]
6 Hb_001828_130 0.0867082827 - - PREDICTED: transcription factor GTE8-like [Jatropha curcas]
7 Hb_012055_060 0.0904616681 - - PREDICTED: uncharacterized protein LOC105639799 isoform X1 [Jatropha curcas]
8 Hb_008511_090 0.0940341758 - - PREDICTED: BTB/POZ domain-containing protein At3g05675-like [Jatropha curcas]
9 Hb_012564_030 0.0948120019 - - coronatine-insensitive 1 [Hevea brasiliensis]
10 Hb_003055_060 0.0985599724 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105649487 isoform X1 [Jatropha curcas]
11 Hb_000442_010 0.0995533236 - - hypothetical protein POPTR_0010s19060g [Populus trichocarpa]
12 Hb_027506_020 0.0999985152 - - PREDICTED: F-box/kelch-repeat protein At1g30090 [Jatropha curcas]
13 Hb_048219_010 0.1010599119 - - coronatine-insensitive 1 [Hevea brasiliensis]
14 Hb_000976_210 0.1011971279 - - PREDICTED: protein PAT1 homolog 1 isoform X1 [Jatropha curcas]
15 Hb_116086_010 0.1025659511 - - hypothetical protein JCGZ_14829 [Jatropha curcas]
16 Hb_001005_190 0.1025854924 - - PREDICTED: UPF0496 protein At3g19330-like isoform X1 [Jatropha curcas]
17 Hb_001123_290 0.1030343237 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 3 [Jatropha curcas]
18 Hb_011491_010 0.1034328379 - - Protein YME1, putative [Ricinus communis]
19 Hb_009767_100 0.1064189905 - - PREDICTED: FRIGIDA-like protein 4a [Jatropha curcas]
20 Hb_033772_030 0.1073617542 - - PREDICTED: CST complex subunit CTC1 [Jatropha curcas]

Gene co-expression network

sample Hb_003752_100 Hb_003752_100 Hb_003082_010 Hb_003082_010 Hb_003752_100--Hb_003082_010 Hb_004109_030 Hb_004109_030 Hb_003752_100--Hb_004109_030 Hb_001864_060 Hb_001864_060 Hb_003752_100--Hb_001864_060 Hb_003175_030 Hb_003175_030 Hb_003752_100--Hb_003175_030 Hb_001828_130 Hb_001828_130 Hb_003752_100--Hb_001828_130 Hb_012055_060 Hb_012055_060 Hb_003752_100--Hb_012055_060 Hb_000976_210 Hb_000976_210 Hb_003082_010--Hb_000976_210 Hb_003082_010--Hb_004109_030 Hb_008511_090 Hb_008511_090 Hb_003082_010--Hb_008511_090 Hb_002043_140 Hb_002043_140 Hb_003082_010--Hb_002043_140 Hb_002890_090 Hb_002890_090 Hb_003082_010--Hb_002890_090 Hb_004109_030--Hb_008511_090 Hb_003373_040 Hb_003373_040 Hb_004109_030--Hb_003373_040 Hb_004109_030--Hb_002890_090 Hb_000070_080 Hb_000070_080 Hb_004109_030--Hb_000070_080 Hb_000941_130 Hb_000941_130 Hb_004109_030--Hb_000941_130 Hb_001864_060--Hb_004109_030 Hb_001864_060--Hb_008511_090 Hb_116086_010 Hb_116086_010 Hb_001864_060--Hb_116086_010 Hb_001864_060--Hb_001828_130 Hb_000025_330 Hb_000025_330 Hb_001864_060--Hb_000025_330 Hb_010381_030 Hb_010381_030 Hb_003175_030--Hb_010381_030 Hb_000886_050 Hb_000886_050 Hb_003175_030--Hb_000886_050 Hb_005389_160 Hb_005389_160 Hb_003175_030--Hb_005389_160 Hb_002078_220 Hb_002078_220 Hb_003175_030--Hb_002078_220 Hb_003398_080 Hb_003398_080 Hb_003175_030--Hb_003398_080 Hb_011491_010 Hb_011491_010 Hb_001828_130--Hb_011491_010 Hb_002798_070 Hb_002798_070 Hb_001828_130--Hb_002798_070 Hb_000243_250 Hb_000243_250 Hb_001828_130--Hb_000243_250 Hb_000322_150 Hb_000322_150 Hb_001828_130--Hb_000322_150 Hb_002636_100 Hb_002636_100 Hb_001828_130--Hb_002636_100 Hb_012564_030 Hb_012564_030 Hb_001828_130--Hb_012564_030 Hb_012055_060--Hb_000243_250 Hb_005016_160 Hb_005016_160 Hb_012055_060--Hb_005016_160 Hb_003055_060 Hb_003055_060 Hb_012055_060--Hb_003055_060 Hb_001005_190 Hb_001005_190 Hb_012055_060--Hb_001005_190 Hb_012055_060--Hb_011491_010 Hb_012055_060--Hb_008511_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
152.018 415.912 114.103 142.373 149.79 161.224
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
154.449 150.571 226.073 142.215 66.2022

CAGE analysis