Hb_003752_120

Information

Type -
Description -
Location Contig3752: 142448-157240
Sequence    

Annotation

kegg
ID pop:POPTR_0002s24100g
description hypothetical protein
nr
ID XP_012084469.1
description PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Jatropha curcas]
swissprot
ID Q9ASS4
description Probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 OS=Arabidopsis thaliana GN=At5g48380 PE=1 SV=1
trembl
ID A0A067LDD6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15068 PE=4 SV=1
Gene Ontology
ID GO:0009506
description probably inactive leucine-rich repeat receptor-like protein kinase at5g48380

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38330: 141913-150902 , PASA_asmbl_38332: 154558-157508
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003752_120 0.0 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Jatropha curcas]
2 Hb_012787_040 0.0722961362 - - PREDICTED: uncharacterized protein LOC105649794 isoform X2 [Jatropha curcas]
3 Hb_004032_310 0.0724352966 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 14 [Jatropha curcas]
4 Hb_001662_170 0.0939032853 - - PREDICTED: phospholipase D delta-like [Jatropha curcas]
5 Hb_002915_070 0.0983068915 - - PREDICTED: protein TRANSPARENT TESTA GLABRA 1 [Jatropha curcas]
6 Hb_000069_780 0.1001657297 - - atpob1, putative [Ricinus communis]
7 Hb_103788_010 0.1001978533 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
8 Hb_006054_030 0.1032128822 - - PREDICTED: protein GPR107-like [Jatropha curcas]
9 Hb_000270_230 0.1053483137 - - PREDICTED: probable beta-1,3-galactosyltransferase 19 [Jatropha curcas]
10 Hb_000803_060 0.1072814035 - - poly(p)/ATP NAD kinase, putative [Ricinus communis]
11 Hb_002154_020 0.1075407103 - - protein with unknown function [Ricinus communis]
12 Hb_000805_230 0.1078246509 - - PREDICTED: oxysterol-binding protein-related protein 3C-like [Jatropha curcas]
13 Hb_007007_080 0.1082681796 - - conserved hypothetical protein [Ricinus communis]
14 Hb_004994_300 0.1104876844 - - synaptotagmin, putative [Ricinus communis]
15 Hb_001053_200 0.1106958329 - - PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
16 Hb_000448_060 0.1117117595 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 2 [Jatropha curcas]
17 Hb_158696_010 0.111712583 - - PREDICTED: putative disease resistance protein RGA4, partial [Jatropha curcas]
18 Hb_005496_160 0.1163856455 - - PREDICTED: calcium-transporting ATPase 1, chloroplastic [Jatropha curcas]
19 Hb_011360_090 0.1185499108 - - PREDICTED: uncharacterized protein LOC105644141 [Jatropha curcas]
20 Hb_004106_010 0.1214124055 - - PREDICTED: protein GPR107 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003752_120 Hb_003752_120 Hb_012787_040 Hb_012787_040 Hb_003752_120--Hb_012787_040 Hb_004032_310 Hb_004032_310 Hb_003752_120--Hb_004032_310 Hb_001662_170 Hb_001662_170 Hb_003752_120--Hb_001662_170 Hb_002915_070 Hb_002915_070 Hb_003752_120--Hb_002915_070 Hb_000069_780 Hb_000069_780 Hb_003752_120--Hb_000069_780 Hb_103788_010 Hb_103788_010 Hb_003752_120--Hb_103788_010 Hb_000803_060 Hb_000803_060 Hb_012787_040--Hb_000803_060 Hb_012787_040--Hb_001662_170 Hb_011360_090 Hb_011360_090 Hb_012787_040--Hb_011360_090 Hb_158696_010 Hb_158696_010 Hb_012787_040--Hb_158696_010 Hb_004106_010 Hb_004106_010 Hb_012787_040--Hb_004106_010 Hb_000448_060 Hb_000448_060 Hb_004032_310--Hb_000448_060 Hb_001489_120 Hb_001489_120 Hb_004032_310--Hb_001489_120 Hb_004032_310--Hb_001662_170 Hb_004994_300 Hb_004994_300 Hb_004032_310--Hb_004994_300 Hb_004032_310--Hb_002915_070 Hb_001662_170--Hb_004106_010 Hb_001053_200 Hb_001053_200 Hb_001662_170--Hb_001053_200 Hb_001662_170--Hb_011360_090 Hb_000805_230 Hb_000805_230 Hb_002915_070--Hb_000805_230 Hb_002915_070--Hb_000448_060 Hb_000179_230 Hb_000179_230 Hb_002915_070--Hb_000179_230 Hb_002915_070--Hb_103788_010 Hb_000270_230 Hb_000270_230 Hb_000069_780--Hb_000270_230 Hb_006054_030 Hb_006054_030 Hb_000069_780--Hb_006054_030 Hb_001369_780 Hb_001369_780 Hb_000069_780--Hb_001369_780 Hb_000059_130 Hb_000059_130 Hb_000069_780--Hb_000059_130 Hb_002387_040 Hb_002387_040 Hb_000069_780--Hb_002387_040 Hb_003637_020 Hb_003637_020 Hb_103788_010--Hb_003637_020 Hb_185513_010 Hb_185513_010 Hb_103788_010--Hb_185513_010 Hb_103788_010--Hb_006054_030 Hb_000732_080 Hb_000732_080 Hb_103788_010--Hb_000732_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.0421 97.8471 29.9206 37.9937 10.8526 12.1551
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.12719 5.9072 7.79981 20.9014 16.0116

CAGE analysis